; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0012380 (gene) of Snake gourd v1 genome

Gene IDTan0012380
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal RNA-processing protein 40
Genome locationLG09:72387299..72390144
RNA-Seq ExpressionTan0012380
SyntenyTan0012380
Gene Ontology termsGO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0071034 - CUT catabolic process (biological process)
GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process (biological process)
GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR004088 - K Homology domain, type 1
IPR012340 - Nucleic acid-binding, OB-fold
IPR026699 - Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR036612 - K Homology domain, type 1 superfamily
IPR037319 - Rrp40, S1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587472.1 Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia]4.2e-12796.71Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPS
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV
        LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLSSPTCPVLESL KKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS

KAG6589448.1 Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia]1.2e-12696.3Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLES  KKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAILNSETL+GVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS

KAG7023129.1 putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-12696.3Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLES  KKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAILNSETL+GVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS

XP_022921727.1 putative exosome complex component rrp40 [Cucurbita moschata]2.1e-12695.88Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANET+KLGGGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLES  KKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAILNSETL+GVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS

XP_022925902.1 putative exosome complex component rrp40 [Cucurbita moschata]4.2e-12796.71Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPS
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV
        LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLSSPTCPVLESL KKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS

TrEMBL top hitse value%identityAlignment
A0A0A0LP58 Ribosomal RNA-processing protein 409.4e-12595.47Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEK SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQD DAISV+KVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIV+DSRADNFLVDIKGPS
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSP+CPVLESL KKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS
        WVNADSPST IVVSNAILNSETL+GVQQRIMVDKLL NLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS

A0A6J1E1A1 Ribosomal RNA-processing protein 401.0e-12695.88Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANET+KLGGGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLES  KKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAILNSETL+GVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS

A0A6J1ECW1 Ribosomal RNA-processing protein 402.0e-12796.71Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPS
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV
        LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLSSPTCPVLESL KKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS

A0A6J1I8H3 Ribosomal RNA-processing protein 401.9e-12595.47Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPS
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFG LKDGY+F+CSTGLSRMLLSSPTCPVLESL KKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAI+NSETL+GVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS

A0A6J1JLH7 Ribosomal RNA-processing protein 402.5e-12594.65Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISV+KVGKLRF+KPNKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGP+
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLES  KKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNA+LNSETL+GVQQRIMVD LLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNLKLSS

SwissProt top hitse value%identityAlignment
Q3T0E1 Exosome complex component RRP405.5e-3735.29Show/hide
Query:  SSSTLVDQPVVPGDVV--------------------LDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVL
        ++ T++DQ V+PG+ +                    L+ +  +   +  G GLR+  D + V K G+LR  +P        YWV+S QKRYVP   D V+
Subjt:  SSSTLVDQPVVPGDVV--------------------LDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVL

Query:  GIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPV
        GIV     D F VD+ G   ASL  LAFEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL +P C +
Subjt:  GIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPV

Query:  LESLVKKLSFETAVGINGRVWVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKL
        L+ + K    E   G+NGR+WV A +   T++++N +   E +T  Q++ +  +L
Subjt:  LESLVKKLSFETAVGINGRVWVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKL

Q7KWX9 Putative exosome complex component rrp403.2e-4544.3Show/hide
Query:  TLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNK-YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAF
        TL DQ VVPGDV+  + ++    +++G GL Q  D +   K G LR+SK ++ YW+E+ QKRYVP  ED V+G +++  A++F VDI     A L   +F
Subjt:  TLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNK-YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAF

Query:  EGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNADSPST
        EG T+ N P   +G L+Y RV   N  M PE+ C     KA GFG L  GYM  CS GLS  LLS   C +L+ L K + +E AVG+NGRVW+N+ S   
Subjt:  EGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNADSPST

Query:  TIVVSNAILNSETLTGVQQRIMVDKLLN
        TIVVSN I NS+ +   Q    + K L+
Subjt:  TIVVSNAILNSETLTGVQQRIMVDKLLN

Q7TQK4 Exosome complex component RRP409.3e-3740.49Show/hide
Query:  GGGLRQDHDAISVAKVGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRVV
        G GLR+  D + V K G+LR  +P+      YWV+S QKRYVP   D V+GIV+    D F VD+ G   ASL  LAFEG T+RN P  ++G L+Y + V
Subjt:  GGGLRQDHDAISVAKVGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRVV

Query:  KVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNADSPSTTIVVSNAILNSETLTGVQQRI
          N  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL +P C +++ L K    E   G+NGR+WV A +   T++++N +   E +T  Q++ 
Subjt:  KVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNADSPSTTIVVSNAILNSETLTGVQQRI

Query:  MVDKL
        +  +L
Subjt:  MVDKL

Q8IPX7 Exosome complex component RRP402.4e-4038.46Show/hide
Query:  SSSSTLVDQPVVPGDVVLDLSNMA-NETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLP
        S++ST+    V+PG+ +  +  +A ++ + LG GLR+  D +  +K G LR  +P  +WV++ Q+RY+P   D +LGIV     D + VDI     AS+ 
Subjt:  SSSSTLVDQPVVPGDVVLDLSNMA-NETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLP

Query:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNAD
         LAFE  +++N P    G L+Y RV+  +  + PEL C ++ GK+   G+L DG+ F+CS  L RMLL    CPVL +L ++L +E AVG+NGR+W+ A 
Subjt:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNAD

Query:  SPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNL
        S   T+ ++NAI   E  +G  +   +DK+  NL
Subjt:  SPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNL

Q9NQT5 Exosome complex component RRP403.5e-3637.99Show/hide
Query:  PGDVV---LDLSNMANETIKL--GGGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVL
        PG  V   L L+  A   +++  G GLR+  D + V K G+LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G   ASL  L
Subjt:  PGDVV---LDLSNMANETIKL--GGGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVL

Query:  AFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNADS
        +FEG T+RN P  ++G L+Y + V  N  M PE+ C D+ G+A G G++ +DG +F+ + GL R LL +P C +++ + K    E   G+NGR+WV A +
Subjt:  AFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLL-KDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNADS

Query:  PSTTIVVSNAILNSETLTGVQQRIMVDKL
           T++++N +   E +T  Q++ +  +L
Subjt:  PSTTIVVSNAILNSETLTGVQQRIMVDKL

Arabidopsis top hitse value%identityAlignment
AT2G25355.1 PNAS-3 related5.9e-9572.22Show/hide
Query:  SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLP
        S+S ++L+DQ VVPGDVVLDLSNM N+TIKLG GLRQD++ ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIVVD + +N+ +DIKGP LA LP
Subjt:  SSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLP

Query:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNAD
        VLAFEG  RRN PKFE+  LLY RVVK N GMNPEL+C D SGKAAGFG LKDG+MFE STGLSRMLLSSPTCPVLE+L KKLSFETA G+NGR WV+A 
Subjt:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNAD

Query:  SPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNL
        +P   I+V+NA++NSETL+G QQRIMV+KLL  +
Subjt:  SPSTTIVVSNAILNSETLTGVQQRIMVDKLLNNL

AT2G25355.2 PNAS-3 related1.9e-8572.04Show/hide
Query:  MANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYV
        M N+TIKLG GLRQD++ ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIVVD + +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  LLY 
Subjt:  MANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYV

Query:  RVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNADSPSTTIVVSNAILNSETLTGVQQ
        RVVK N GMNPEL+C D SGKAAGFG LKDG+MFE STGLSRMLLSSPTCPVLE+L KKLSFETA G+NGR WV+A +P   I+V+NA++NSETL+G QQ
Subjt:  RVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNADSPSTTIVVSNAILNSETLTGVQQ

Query:  RIMVDKLLNNL
        RIMV+KLL  +
Subjt:  RIMVDKLLNNL

AT4G32175.1 PNAS-3 related4.5e-9573.73Show/hide
Query:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS
        M  K S S ++L++Q VVPGDVVLDLSNM N+TIKLG GL QD+DAIS  + GKL +SKPNKYW+ESS KRY+P  +D VLGIVVDSRADNF VDIKGP 
Subjt:  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFE+G LLY+RVVK N GMNPEL+CT+ASGKAA FG L+DG+MFE STGLSRMLL+SPT PV+E+L KKLSFE AVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLL
        WVNA +P   I+V+NAI+NSE+L+G QQRIMV+KLL
Subjt:  WVNADSPSTTIVVSNAILNSETLTGVQQRIMVDKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAAAAATCTTCCAGTTCGTCATCTACTCTCGTTGATCAGCCGGTTGTTCCAGGAGATGTGGTTCTCGACCTCTCAAACATGGCCAACGAAACCATCAAGCTTGG
AGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTCGCCAAAGTTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGC
CATGTGCAGAAGATTGTGTACTTGGAATTGTGGTTGACTCTAGAGCCGATAATTTTCTTGTTGACATAAAAGGTCCTTCATTGGCCTCTCTTCCTGTTCTTGCATTTGAA
GGAGGAACAAGGCGAAACATTCCCAAATTTGAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTAAACCCTGGTATGAATCCCGAGTTGGCATGCACTGATGCCAG
TGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCCGTTCTTGAATCTC
TTGTGAAGAAGCTTTCATTCGAGACAGCAGTTGGTATAAATGGCCGTGTTTGGGTCAATGCTGATTCTCCGTCCACAACCATTGTTGTTTCTAATGCAATATTGAACTCG
GAAACTCTGACTGGGGTCCAACAGAGAATCATGGTGGACAAACTCCTTAATAATTTAAAGCTGTCAAGCTAG
mRNA sequenceShow/hide mRNA sequence
CGCGTACTACTTCCTACTCTTTCGTGTTCATTGCTCTCGCCCAATACATAGGTTTCTTCCACTCAAAATTCTTCCGATCGCCGACTGCAAATACAAGATCTCGTTTACTT
CGTGGAAAGCGTTGTATTTGTAATCATGGTTGAAAAATCTTCCAGTTCGTCATCTACTCTCGTTGATCAGCCGGTTGTTCCAGGAGATGTGGTTCTCGACCTCTCAAACA
TGGCCAACGAAACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTCGCCAAAGTTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTT
GAAAGCTCACAGAAAAGGTACGTGCCATGTGCAGAAGATTGTGTACTTGGAATTGTGGTTGACTCTAGAGCCGATAATTTTCTTGTTGACATAAAAGGTCCTTCATTGGC
CTCTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGCGAAACATTCCCAAATTTGAGATGGGTGCCCTGCTTTATGTGCGGGTAGTGAAGGTAAACCCTGGTATGAATC
CCGAGTTGGCATGCACTGATGCCAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCG
CCAACATGTCCCGTTCTTGAATCTCTTGTGAAGAAGCTTTCATTCGAGACAGCAGTTGGTATAAATGGCCGTGTTTGGGTCAATGCTGATTCTCCGTCCACAACCATTGT
TGTTTCTAATGCAATATTGAACTCGGAAACTCTGACTGGGGTCCAACAGAGAATCATGGTGGACAAACTCCTTAATAATTTAAAGCTGTCAAGCTAGTCTTGTAAACTTT
AGGGCCAGTTTTTTTTGTTTGTTAAATTACATTTTTGGTTATGTATCATTTAGCTCGTGGGTTTTATGAAGCAGTTATTGATCAATTCTTTTTTCCTCTCTAACCAAAAT
TGGAATATATATATATATATATTGATTCAATTA
Protein sequenceShow/hide protein sequence
MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFE
GGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESLVKKLSFETAVGINGRVWVNADSPSTTIVVSNAILNS
ETLTGVQQRIMVDKLLNNLKLSS