CuGenDBv2

Gene ID	Tan0012388
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein RDM1-like
Genome location	LG10:6785740..6786393
RNA-Seq Expression	Tan0012388
Synteny	Tan0012388
Gene Ontology terms	GO:0044030 - regulation of DNA methylation (biological process) GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domains	IPR015270 - Protein RDM1, plant IPR036319 - RDM1 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7028891.1 Protein RDM1 [Cucurbita argyrosperma subsp. argyrosperma]

4.1e-92

95.4

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFK PAKEMTSEGMLIKRAEMYQEYMKQ+PIPAHRGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHEV+VDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL

XP_022951070.1 protein RDM1-like [Cucurbita moschata]

4.1e-92

95.4

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFK PAKEMTSEGMLIKRAEMYQEYMKQ+PIPAHRGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHEV+VDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL

XP_022974457.1 protein RDM1-like [Cucurbita maxima]

3.1e-92

95.4

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFK PAKEMTSE MLIKRAEMYQEYMKQ+PIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHEV+VDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL

XP_023538686.1 protein RDM1-like [Cucurbita pepo subsp. pepo]

1.8e-92

95.4

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFK PAKEMTS+GMLIKRAEMYQEYMKQ+PIPAHRGSVIPFTTWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHEV+VDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL

XP_038877941.1 protein RDM1 [Benincasa hispida]

2.7e-91

94.83

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G QNDGFEFKPS+DDFK PAKEMTSEGMLIKRAEMYQEYMKQ+ IPA RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHE +VDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AWI8 protein RDM1

4.6e-89

91.95

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE   QNDG+EFKPS+DDFK PAKEMTSEGML+KRAEMYQEYMKQ+ IPA RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHE +VDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL

A0A6J1GHM4 protein RDM1-like

2.0e-92

95.4

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFK PAKEMTSEGMLIKRAEMYQEYMKQ+PIPAHRGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHEV+VDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL

A0A6J1GV10 protein RDM1

3.7e-91

94.25

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G QNDGFEFKPS+DDFK PAKEMT+EGMLIKRAEMYQEYMKQ+ IPA RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHE +VDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL

A0A6J1IGA1 protein RDM1-like

1.5e-92

95.4

Show/hide

Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFK PAKEMTSE MLIKRAEMYQEYMKQ+PIPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHEV+VDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL

A0A6J1INZ9 protein RDM1-like

2.9e-91

94.25

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Query:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G QNDGFEFKPS+DDFK PAKEMT+EGMLIKRAEMYQEYMKQ+ IPA RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHE +VDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL

SwissProt top hits

e value

%identity

Alignment

Q9LUJ3 Protein RDM1

9.9e-49

57.59

Show/hide

Query:  SGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQVPIP +RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RF
Subjt:  SGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF

Query:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQ
        G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+  F+D IFP+
Subjt:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1

7.0e-50

57.59

Show/hide

Query:  SGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF
        SG+S SSD +        E            +++  EG L++RAEMYQ+YMKQVPIP +RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RF
Subjt:  SGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRF

Query:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQ
        G+  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+  F+D IFP+
Subjt:  GSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQ

Sequences

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CDS sequence

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ATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCGTCAGGTGAATCTTCTTCCTCTGATTCAGAAATAGGAGGACAAAATGATGGATTTGAGTTCAAGCC
TTCGATTGACGATTTCAAATTTCCTGCCAAAGAAATGACATCTGAAGGTATGTTGATTAAGAGGGCAGAAATGTATCAAGAATACATGAAACAGGTCCCGATCCCAGCAC
ACCGTGGTTCTGTAATACCATTTACAACATGGATGGGACTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACCTGACTAACATTCTACTCAAACAGTGG
GATCAATTAAGGTTCGGAAGCGTGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACCGTATGGCTGGTTGAAGAGATTCATAGGCGCAC
CTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCACGAAGTGTTCGTTGACTCCATTTTCCCCCAACTATGA

mRNA sequence

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Protein sequence

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MKRPMPWNEQVDVISSGESSSSDSEIGGQNDGFEFKPSIDDFKFPAKEMTSEGMLIKRAEMYQEYMKQVPIPAHRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQW
DQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEVFVDSIFPQL

Tan0012388 (gene) of Snake gourd v1 genome