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Tan0012397 (gene) of Snake gourd v1 genome

Gene IDTan0012397
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG07:43967835..43968233
RNA-Seq ExpressionTan0012397
SyntenyTan0012397
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026280.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-3164.22Show/hide
Query:  GREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQKGA
        G   S+ ESS P  E N+EEQ+  R+ QRL   +  AQ+D E KYGIERLKALGATTF GTT+P DAE WL +IEKCF+V RC EDRKV+LAAFLLQ GA
Subjt:  GREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQKGA

Query:  DDWWNISES
        +DWW++ ES
Subjt:  DDWWNISES

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.8e-3258.09Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC
        M RG  R     +T         G   S+ ESS P  E NMEEQ+  R+ QRL   + SAQ+DPE KYGIERLKALGATTF GTT+PADAE WL +IEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC

Query:  FRVMRCPEDRKVDLAAFLLQKG----ADDWWNISES
        FRV RCPEDRKV+LA+FLLQ G     +DWW + ES
Subjt:  FRVMRCPEDRKVDLAAFLLQKG----ADDWWNISES

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-3056.06Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC
        M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPE KYG ERLKALGATTF GTT+P D E WL +IEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC

Query:  FRVMRCPEDRKVDLAAFLLQKGADDWWNISES
        FRV R  EDRKV+LAAFLLQ  A+DWW + ES
Subjt:  FRVMRCPEDRKVDLAAFLLQKGADDWWNISES

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]4.4e-3056.06Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC
        M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPE KYG ERLKALGATTF GTT+P D E WL +IEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC

Query:  FRVMRCPEDRKVDLAAFLLQKGADDWWNISES
        FRV R  EDRKV+LAAFLLQ  A+DWW + ES
Subjt:  FRVMRCPEDRKVDLAAFLLQKGADDWWNISES

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]9.5e-3372.83Show/hide
Query:  MEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQKGADDWWNISES
        ME+++F RITQRLA SVGS Q DPE K+GIERLKALGATTF+GTTDP DAE+WL +IEKCF+VMRCPED KV+LA FLLQKG + WW + E+
Subjt:  MEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQKGADDWWNISES

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein8.7e-3264.22Show/hide
Query:  GREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQKGA
        G   S+ ESS P  E N+EEQ+  R+ QRL   +  AQ+D E KYGIERLKALGATTF GTT+P DAE WL +IEKCF+V RC EDRKV+LAAFLLQ GA
Subjt:  GREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQKGA

Query:  DDWWNISES
        +DWW++ ES
Subjt:  DDWWNISES

A0A5A7T1M0 Reverse transcriptase2.1e-3056.06Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC
        M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPE KYG ERLKALGATTF GTT+P D E WL +IEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC

Query:  FRVMRCPEDRKVDLAAFLLQKGADDWWNISES
        FRV R  EDRKV+LAAFLLQ  A+DWW + ES
Subjt:  FRVMRCPEDRKVDLAAFLLQKGADDWWNISES

A0A5A7UZM6 Gag protease polyprotein-like protein5.8e-2879.73Show/hide
Query:  SAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQKGADDWWNISES
        S Q+DPE KYGIERLKALGATTF GTT+PADAE WL +IEKCFRV RCPEDRKV+LAAFLLQ GA+DWW + ES
Subjt:  SAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRKVDLAAFLLQKGADDWWNISES

A0A5D3BB91 Reverse transcriptase2.1e-3056.06Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC
        M RG  R     E          G   S+ ESS P+ E N+EEQ+  R+ QRL   + SAQ+DPE KYG ERLKALGATTF GTT+P D E WL +IEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC

Query:  FRVMRCPEDRKVDLAAFLLQKGADDWWNISES
        FRV R  EDRKV+LAAFLLQ  A+DWW + ES
Subjt:  FRVMRCPEDRKVDLAAFLLQKGADDWWNISES

A0A5D3DES5 DNA/RNA polymerases superfamily protein1.3e-3258.09Show/hide
Query:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC
        M RG  R     +T         G   S+ ESS P  E NMEEQ+  R+ QRL   + SAQ+DPE KYGIERLKALGATTF GTT+PADAE WL +IEKC
Subjt:  MARGGKRGR-QVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKC

Query:  FRVMRCPEDRKVDLAAFLLQKG----ADDWWNISES
        FRV RCPEDRKV+LA+FLLQ G     +DWW + ES
Subjt:  FRVMRCPEDRKVDLAAFLLQKG----ADDWWNISES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAATATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAATGAAGTATGGCATTGAAAGACTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCAGAGGTTTGGTTAAATATGATTGAGAAGTGTTTTAGGGTCATGCGATGCCCTGAAGATAGGAAG
GTCGATTTAGCAGCATTCTTACTCCAGAAAGGAGCAGATGATTGGTGGAATATAAGCGAGAGCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGGTGGCAAACGAGGCAGGCAAGTGGAGACTGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAATATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAGTGTTGGATCAGCACAAGCAGATCCAGAAATGAAGTATGGCATTGAAAGACTGAAAG
CCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCGCTGATGCAGAGGTTTGGTTAAATATGATTGAGAAGTGTTTTAGGGTCATGCGATGCCCTGAAGATAGGAAG
GTCGATTTAGCAGCATTCTTACTCCAGAAAGGAGCAGATGATTGGTGGAATATAAGCGAGAGCGAGTAA
Protein sequenceShow/hide protein sequence
MARGGKRGRQVETGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAESVGSAQADPEMKYGIERLKALGATTFEGTTDPADAEVWLNMIEKCFRVMRCPEDRK
VDLAAFLLQKGADDWWNISESE