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Tan0012435 (gene) of Snake gourd v1 genome

Gene IDTan0012435
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG07:42504019..42504252
RNA-Seq ExpressionTan0012435
SyntenyTan0012435
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-2064.94Show/hide
Query:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS
        +S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM EG S+++HVL+MMVHFN+AE NG  IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-2064.94Show/hide
Query:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS
        +S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM EG S+++HVL+MMVHFN+AE NG  IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS

XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]1.7e-2170.67Show/hide
Query:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDE
        +SD+LAKKHE  ITAKEIMD +Q MFGQ S+QARH ALK+I+NSRM EG+S+++HVL++MVHFN+AESNG  IDE
Subjt:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDE

XP_022155999.1 uncharacterized protein LOC111022974 [Momordica charantia]6.4e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS
        +SD+LAKKHE M+ A+EIMD ++ MFGQ S QARH ALK+I+NSRM EGTS+Q+HVL++MVHFN+AE NG  IDE S
Subjt:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS

XP_022158197.1 uncharacterized protein LOC111024734 [Momordica charantia]6.4e-2166.23Show/hide
Query:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS
        +SD+LAKKHE  +T KEIMD +Q MFGQ S QARH ALK+++NSRM EG+S+++HVL++MVHFN+AESNG  IDE S
Subjt:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein8.9e-2164.94Show/hide
Query:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS
        +S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM EG S+++HVL+MMVHFN+AE NG  IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS

A0A5D3CPJ6 Gag/pol protein8.9e-2164.94Show/hide
Query:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS
        +S++LAKKHE M+TA+EIMD +Q MFGQ S Q +H+ALKYI+N+RM EG S+++HVL+MMVHFN+AE NG  IDE+S
Subjt:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS

A0A6J1DFZ2 uncharacterized protein LOC1110200958.1e-2270.67Show/hide
Query:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDE
        +SD+LAKKHE  ITAKEIMD +Q MFGQ S+QARH ALK+I+NSRM EG+S+++HVL++MVHFN+AESNG  IDE
Subjt:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDE

A0A6J1DRZ2 uncharacterized protein LOC1110229743.1e-2167.53Show/hide
Query:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS
        +SD+LAKKHE M+ A+EIMD ++ MFGQ S QARH ALK+I+NSRM EGTS+Q+HVL++MVHFN+AE NG  IDE S
Subjt:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS

A0A6J1DWL0 uncharacterized protein LOC1110247343.1e-2166.23Show/hide
Query:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS
        +SD+LAKKHE  +T KEIMD +Q MFGQ S QARH ALK+++NSRM EG+S+++HVL++MVHFN+AESNG  IDE S
Subjt:  MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGACATCTTAGCCAAAAAGCATGAGGGCATGATAACCGCCAAGGAAATCATGGATTTCGTGCAAGGTATGTTTGGACAACTGTCCACACAGGCCCGACACAATGC
CCTAAAGTACATATTCAACTCGAGGATGCTAGAGGGAACATCTATTCAGGATCATGTCCTTGATATGATGGTGCACTTCAACATCGCGGAGTCGAATGGTGATTCCATCG
ATGAATCGAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGACATCTTAGCCAAAAAGCATGAGGGCATGATAACCGCCAAGGAAATCATGGATTTCGTGCAAGGTATGTTTGGACAACTGTCCACACAGGCCCGACACAATGC
CCTAAAGTACATATTCAACTCGAGGATGCTAGAGGGAACATCTATTCAGGATCATGTCCTTGATATGATGGTGCACTTCAACATCGCGGAGTCGAATGGTGATTCCATCG
ATGAATCGAGCTAG
Protein sequenceShow/hide protein sequence
MSDILAKKHEGMITAKEIMDFVQGMFGQLSTQARHNALKYIFNSRMLEGTSIQDHVLDMMVHFNIAESNGDSIDESS