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Tan0012457 (gene) of Snake gourd v1 genome

Gene IDTan0012457
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
Genome locationLG10:2762049..2762549
RNA-Seq ExpressionTan0012457
SyntenyTan0012457
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KNA03763.1 hypothetical protein SOVF_206000, partial [Spinacia oleracea]8.6e-0736.36Show/hide
Query:  GIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCHR
        G+G VI D  GS       Q++ SW +++ EAKAI+ GL+  N+C   H + +IVE D+S +IK L E+  D S L   ++ +      F  V F    R
Subjt:  GIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCHR

Query:  SKNLLAHNIA
          N  AH +A
Subjt:  SKNLLAHNIA

XP_021808158.1 uncharacterized protein LOC110751913 [Prunus avium]4.6e-0836.64Show/hide
Query:  GGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCH
        GG+GWVIRDS+G L+CAGG+   R     ++E  AI   L A     + H   ++VESD+   I  LN      S+L   V  I   V  F  V+FV   
Subjt:  GGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCH

Query:  RSKNLLAHNIARSVCSLGDFDGAFCSPHGSN
        +S N +AH +A            F S HG N
Subjt:  RSKNLLAHNIARSVCSLGDFDGAFCSPHGSN

XP_021841246.1 uncharacterized protein LOC110781352 [Spinacia oleracea]8.6e-0732.73Show/hide
Query:  GIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCHR
        G+G +IRD  G+++ A   Q+   W++ ++EAK+I+ GL+   +C     + ++VESD  +VIK +N ++ D   L    + I      F  +NFV  +R
Subjt:  GIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCHR

Query:  SKNLLAHNIA
          NL  H +A
Subjt:  SKNLLAHNIA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.9e-0734.21Show/hide
Query:  NVGGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVK
        N GGIGW++RD  G +I A  + I+    I  LE  AI EGL A  +    H + + +ESDS E I  L+   +D +E+   ++ I   ++   +V+   
Subjt:  NVGGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVK

Query:  CHRSKNLLAHNIAR
          R  N +AH +AR
Subjt:  CHRSKNLLAHNIAR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.7e-0736.61Show/hide
Query:  GGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCH
        GGIGW+IR  +G ++ AG + ++    +K+LEA AILEGL       V+  + L +E+DS+EV   LN   EDL++    V+ I        ++ F K  
Subjt:  GGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCH

Query:  RSKNLLAHNIAR
        R  N  AH++A+
Subjt:  RSKNLLAHNIAR

TrEMBL top hitse value%identityAlignment
A0A0K9QAP7 RNase H domain-containing protein (Fragment)4.2e-0736.36Show/hide
Query:  GIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCHR
        G+G VI D  GS       Q++ SW +++ EAKAI+ GL+  N+C   H + +IVE D+S +IK L E+  D S L   ++ +      F  V F    R
Subjt:  GIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCHR

Query:  SKNLLAHNIA
          N  AH +A
Subjt:  SKNLLAHNIA

A0A6J1CP26 uncharacterized protein LOC1110134121.9e-0734.21Show/hide
Query:  NVGGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVK
        N GGIGW++RD  G +I A  + I+    I  LE  AI EGL A  +    H + + +ESDS E I  L+   +D +E+   ++ I   ++   +V+   
Subjt:  NVGGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVK

Query:  CHRSKNLLAHNIAR
          R  N +AH +AR
Subjt:  CHRSKNLLAHNIAR

A0A6J1DNV9 uncharacterized protein LOC1110224038.4e-0836.61Show/hide
Query:  GGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCH
        GGIGW+IR  +G ++ AG + ++    +K+LEA AILEGL       V+  + L +E+DS+EV   LN   EDL++    V+ I        ++ F K  
Subjt:  GGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCH

Query:  RSKNLLAHNIAR
        R  N  AH++A+
Subjt:  RSKNLLAHNIAR

A0A6P5S2T0 uncharacterized protein LOC1107519132.2e-0836.64Show/hide
Query:  GGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCH
        GG+GWVIRDS+G L+CAGG+   R     ++E  AI   L A     + H   ++VESD+   I  LN      S+L   V  I   V  F  V+FV   
Subjt:  GGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCH

Query:  RSKNLLAHNIARSVCSLGDFDGAFCSPHGSN
        +S N +AH +A            F S HG N
Subjt:  RSKNLLAHNIARSVCSLGDFDGAFCSPHGSN

A0A803MUM1 Uncharacterized protein1.9e-0735.78Show/hide
Query:  IGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCHRS
        +G V+RD  G ++ AG +Q+ +SW   ++EAKA++ GL+   +C V   K +IVESD   ++K +N   +D S L    K I C    F  + F    R 
Subjt:  IGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCHRS

Query:  KNLLAHNIA
         N +AH +A
Subjt:  KNLLAHNIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.5e-0424.78Show/hide
Query:  GWVIRDSNGSLICAG---GKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCH
        GWV+RDSNGS + AG   G+++  + +    E +A++  ++    C+   +K +  E D+  +   +N   +    ++N+++ I+ ++R+F  ++F    
Subjt:  GWVIRDSNGSLICAG---GKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCH

Query:  RSKNLLAHNIARS
        R  N  A  +A++
Subjt:  RSKNLLAHNIARS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAAAGTCAATGTTGGTGGTATTGGTTGGGTTATCCGTGACTCTAATGGCTCTCTGATTTGTGCAGGAGGGAAGCAAATTAAAAGAAGTTGGCAAATTAAAGTGCT
GGAAGCGAAGGCGATTCTTGAGGGTCTTGAAGCGTTTAACAAGTGTTATGTCGTCCATCACAAGTTGCTGATTGTGGAGTCGGACTCGAGCGAAGTGATCAAGTGCCTGA
ACGAGGATGTTGAAGACCTCTCTGAGTTATACAATTTTGTTAAAGCGATTAATTGTTTTGTTAGGCGCTTTCCTGTTGTTAATTTTGTTAAGTGTCATAGGTCTAAAAAC
CTCTTAGCTCATAACATTGCTAGAAGTGTTTGTAGTTTAGGTGATTTTGATGGAGCTTTTTGCTCCCCCCATGGCTCTAACGTTTCTAGGTGCGGTTTTGGCGAGTACCC
ATCTTGGGTCTCCGACCTGTTGCCTGCGGGCTGCACTCCTTGTGGGTCCGTTGTGGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATAAAGTCAATGTTGGTGGTATTGGTTGGGTTATCCGTGACTCTAATGGCTCTCTGATTTGTGCAGGAGGGAAGCAAATTAAAAGAAGTTGGCAAATTAAAGTGCT
GGAAGCGAAGGCGATTCTTGAGGGTCTTGAAGCGTTTAACAAGTGTTATGTCGTCCATCACAAGTTGCTGATTGTGGAGTCGGACTCGAGCGAAGTGATCAAGTGCCTGA
ACGAGGATGTTGAAGACCTCTCTGAGTTATACAATTTTGTTAAAGCGATTAATTGTTTTGTTAGGCGCTTTCCTGTTGTTAATTTTGTTAAGTGTCATAGGTCTAAAAAC
CTCTTAGCTCATAACATTGCTAGAAGTGTTTGTAGTTTAGGTGATTTTGATGGAGCTTTTTGCTCCCCCCATGGCTCTAACGTTTCTAGGTGCGGTTTTGGCGAGTACCC
ATCTTGGGTCTCCGACCTGTTGCCTGCGGGCTGCACTCCTTGTGGGTCCGTTGTGGGCTAG
Protein sequenceShow/hide protein sequence
MNKVNVGGIGWVIRDSNGSLICAGGKQIKRSWQIKVLEAKAILEGLEAFNKCYVVHHKLLIVESDSSEVIKCLNEDVEDLSELYNFVKAINCFVRRFPVVNFVKCHRSKN
LLAHNIARSVCSLGDFDGAFCSPHGSNVSRCGFGEYPSWVSDLLPAGCTPCGSVVG