; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0012483 (gene) of Snake gourd v1 genome

Gene IDTan0012483
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationLG06:5870313..5870777
RNA-Seq ExpressionTan0012483
SyntenyTan0012483
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046672.1 extensin-2 [Cucumis melo var. makuwa]4.0e-5983.02Show/hide
Query:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQL----PPPPVVDCPP---PPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP
        MAN I IFLTFFL +  KFS +SSA+A+AKDQVGCSMCS+CDNPCQL    PPPPVV+CPP   PPPPPSPPPPLPTSQCPPPP+PPSCDACVYPSPPPP
Subjt:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQL----PPPPVVDCPP---PPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL
        SSVQPYPP+DGGQFPG+APPPPNPILPYFPYYYYSPPSAS KSV FSWK+LPL FLII+
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL

XP_022953998.1 leucine-rich repeat extensin-like protein 3 [Cucurbita moschata]1.1e-5175.47Show/hide
Query:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPP--VVDC-----PPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP
        MA+L  IFLT FL + SKF S+SS    A+DQVGCSMC+SCDNPCQLPPPP  +VDC     PPPPPPPSPPPPL T +CPPPP+PPSCDACVYPSPPPP
Subjt:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPP--VVDC-----PPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL
        SS+QPY P DGGQ+PGLAPPPPNPILPYFPYYYY+PPS SGKSV FSWK LPL F++ L
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL

XP_022991777.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]5.8e-5074.21Show/hide
Query:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPP-------VVDCPPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP
        MA+L  IFLT FL + SKF S+S A   A+DQVGCSMCSSCDNPCQLPPPP       VVDCPPPP P  PPPPLP  +CPPPP+PPSCDACVYPSPPPP
Subjt:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPP-------VVDCPPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL
        SS+QPY P DGGQ+PG+APPPPNPILPYFPYYYY+PPS SGKSV FSWK LPL F++ L
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL

XP_023514546.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]1.3e-4973.38Show/hide
Query:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPPSSVQPYP
        M NL+ I+ TF L T SKFS +SSA A+AKDQVGCSMCSSCDNPCQLPP              PPPP PTSQCPPPP PPSC  C++PSP PPSSVQPY 
Subjt:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPPSSVQPYP

Query:  PADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIILCL
        PADGGQFPGLAPPPPNPILPY+PYYYYSPP+ASG+SVS SWKILPL  LII+CL
Subjt:  PADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIILCL

XP_023549397.1 leucine-rich repeat extensin-like protein 6 [Cucurbita pepo subsp. pepo]5.1e-5479.35Show/hide
Query:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPP--VVDC-PPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPPSSVQ
        MA+L  IFLT FL + SKF S+SSA   A+DQVGCSMCSSCDNPCQLPPPP  +VDC PPPPPPPSPPPPLPT +CPPPP+PPSCDACVYPSPPPPSS+Q
Subjt:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPP--VVDC-PPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPPSSVQ

Query:  PYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL
        PY P DGGQ+PGLAPPPPNPILPYFPYYYY+PPS SGKSV FSWK LPL F++ L
Subjt:  PYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL

TrEMBL top hitse value%identityAlignment
A0A0A0K5N4 Uncharacterized protein1.3e-5883.02Show/hide
Query:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQL----PPPPVVDCPPP---PPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP
        MANLI IFLTFFL + +KFS +SSA A+AKDQVGCSMCS+CDNPCQL    PPPPVV+CPPP   PPPPSPPPPLPTSQCPPPP+PPSCDACVYPSPPPP
Subjt:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQL----PPPPVVDCPPP---PPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL
        SSVQPYPP+ GGQFPG+APPPPNPILPYFPYYYYSPPSAS KSV FSWK L L FLIIL
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL

A0A5D3D2P5 Extensin-22.0e-5983.02Show/hide
Query:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQL----PPPPVVDCPP---PPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP
        MAN I IFLTFFL +  KFS +SSA+A+AKDQVGCSMCS+CDNPCQL    PPPPVV+CPP   PPPPPSPPPPLPTSQCPPPP+PPSCDACVYPSPPPP
Subjt:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQL----PPPPVVDCPP---PPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL
        SSVQPYPP+DGGQFPG+APPPPNPILPYFPYYYYSPPSAS KSV FSWK+LPL FLII+
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL

A0A6J1GPW6 leucine-rich repeat extensin-like protein 35.2e-5275.47Show/hide
Query:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPP--VVDC-----PPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP
        MA+L  IFLT FL + SKF S+SS    A+DQVGCSMC+SCDNPCQLPPPP  +VDC     PPPPPPPSPPPPL T +CPPPP+PPSCDACVYPSPPPP
Subjt:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPP--VVDC-----PPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL
        SS+QPY P DGGQ+PGLAPPPPNPILPYFPYYYY+PPS SGKSV FSWK LPL F++ L
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL

A0A6J1H7D0 glyceraldehyde-3-phosphate dehydrogenase, testis-specific-like5.3e-4973.55Show/hide
Query:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPPSSVQPYP
        MANL+ I  TF L TH KFS +SSA A+AKDQVGCSMCSSCDNPCQLPPPP            PPPP PTSQCPPPP PPSC  C++PSP PPSSVQPY 
Subjt:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPPSSVQPYP

Query:  PADGGQFPGLA-PPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIILCL
        PADG QFPGLA PPPPNPILPY+PYYYYSPP+ASG+ VS SWKILPL  LII+CL
Subjt:  PADGGQFPGLA-PPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIILCL

A0A6J1JMT5 leucine-rich repeat extensin-like protein 32.8e-5074.21Show/hide
Query:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPP-------VVDCPPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP
        MA+L  IFLT FL + SKF S+S A   A+DQVGCSMCSSCDNPCQLPPPP       VVDCPPPP P  PPPPLP  +CPPPP+PPSCDACVYPSPPPP
Subjt:  MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPP-------VVDCPPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPP

Query:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL
        SS+QPY P DGGQ+PG+APPPPNPILPYFPYYYY+PPS SGKSV FSWK LPL F++ L
Subjt:  SSVQPYPPADGGQFPGLAPPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G06750.1 hydroxyproline-rich glycoprotein family protein2.5e-0642.52Show/hide
Query:  AKDQ-VGCSMCSSCDNPCQLPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPPSSVQP-YPPADGGQFPGLAPPPPNPILPYFPYYY
        +KD+ V C+MCSSCDNPC   P P    PPPPPP S          PPPP+  S     YP P         YPP   G +    PPPPNPI+PYFP+YY
Subjt:  AKDQ-VGCSMCSSCDNPCQLPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPPSSVQP-YPPADGGQFPGLAPPPPNPILPYFPYYY

Query:  YSPPSASGKSVSFSWKILPLAFLIILC
        ++PP     S      +L   F ++LC
Subjt:  YSPPSASGKSVSFSWKILPLAFLIILC

AT4G16140.1 proline-rich family protein5.2e-1242.77Show/hide
Query:  IFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPPVVDCPPPPPPPSPPPPLP-TSQCPPPPA----------PPSCDACVYPSPPPPSS
        +FL FF  T +  ++++S + +A     C+MC+SCDNPCQ  P P    PPPP  PSPPPP P T+ CPPPP+          PP+  +  Y  PP  SS
Subjt:  IFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPPVVDCPPPPPPPSPPPPLP-TSQCPPPPA----------PPSCDACVYPSPPPPSS

Query:  VQPY--PPADGGQFPGLAPPPPNPILPYFPYYYYSPP-----SASGKSVSFSWKILPLAFLIILCL
           Y  PP  GG +P    PPPNPI+PYFP+YYY+PP     S S   + FS+ +   +F++I  L
Subjt:  VQPY--PPADGGQFPGLAPPPPNPILPYFPYYYYSPP-----SASGKSVSFSWKILPLAFLIILCL

AT5G49280.1 hydroxyproline-rich glycoprotein family protein8.5e-1544.37Show/hide
Query:  SVSSAAALAKDQVGCSMCSSCDNPCQLPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPAPPSC---DACVYPSP---------PPP----SSVQPYPPADG
        SV+       + V C+MCSSCDNPC     PV   PPPP P  PPP  PT+ CPPPP+PPS     +  YP P         PPP         YPP   
Subjt:  SVSSAAALAKDQVGCSMCSSCDNPCQLPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPAPPSC---DACVYPSP---------PPP----SSVQPYPPADG

Query:  GQFPGLAPPPPNPILPYFPYYYYSPPSASGKS-VSFSWKILPLAFLIILCL
        G +P   PPPPNPI+PYFP+YY++PP  SG      S+ I+   F + LCL
Subjt:  GQFPGLAPPPPNPILPYFPYYYYSPPSASGKS-VSFSWKILPLAFLIILCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAATCTCATCCCCATTTTTCTCACTTTCTTCCTCTCTACACACTCAAAATTTTCCTCTGTCTCATCGGCGGCCGCCCTGGCCAAGGATCAGGTCGGCTGTTCTAT
GTGCTCAAGTTGTGACAATCCCTGCCAACTTCCTCCTCCGCCGGTTGTTGACTGCCCGCCGCCCCCTCCGCCGCCATCTCCGCCACCCCCACTTCCCACTTCACAATGTC
CCCCTCCTCCGGCTCCCCCCTCGTGCGACGCATGCGTCTACCCTTCGCCGCCGCCGCCGTCCTCTGTCCAGCCGTACCCGCCGGCTGATGGTGGCCAATTTCCCGGCCTT
GCTCCGCCGCCGCCAAACCCAATTTTACCGTATTTTCCTTACTATTATTACAGTCCCCCCTCTGCTTCTGGCAAATCCGTTTCATTTTCATGGAAAATTTTGCCTTTGGC
TTTCTTGATCATTCTTTGCCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAATCTCATCCCCATTTTTCTCACTTTCTTCCTCTCTACACACTCAAAATTTTCCTCTGTCTCATCGGCGGCCGCCCTGGCCAAGGATCAGGTCGGCTGTTCTAT
GTGCTCAAGTTGTGACAATCCCTGCCAACTTCCTCCTCCGCCGGTTGTTGACTGCCCGCCGCCCCCTCCGCCGCCATCTCCGCCACCCCCACTTCCCACTTCACAATGTC
CCCCTCCTCCGGCTCCCCCCTCGTGCGACGCATGCGTCTACCCTTCGCCGCCGCCGCCGTCCTCTGTCCAGCCGTACCCGCCGGCTGATGGTGGCCAATTTCCCGGCCTT
GCTCCGCCGCCGCCAAACCCAATTTTACCGTATTTTCCTTACTATTATTACAGTCCCCCCTCTGCTTCTGGCAAATCCGTTTCATTTTCATGGAAAATTTTGCCTTTGGC
TTTCTTGATCATTCTTTGCCTCTAA
Protein sequenceShow/hide protein sequence
MANLIPIFLTFFLSTHSKFSSVSSAAALAKDQVGCSMCSSCDNPCQLPPPPVVDCPPPPPPPSPPPPLPTSQCPPPPAPPSCDACVYPSPPPPSSVQPYPPADGGQFPGL
APPPPNPILPYFPYYYYSPPSASGKSVSFSWKILPLAFLIILCL