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Tan0012485 (gene) of Snake gourd v1 genome

Gene IDTan0012485
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG07:15296247..15296597
RNA-Seq ExpressionTan0012485
SyntenyTan0012485
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]4.6e-0557.89Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSNISFKNCWE
        +NF LWQVQVKDVLIQSGLHKALKGR +   PE +SSD   T+ + S ++     WE
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSNISFKNCWE

KAF6150548.1 hypothetical protein GIB67_030349 [Kingdonia uniflora]2.6e-0842.57Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSNISFK-----NCWECGQPGHMKKSC----PNRASSSKGSGSDANAVSLVSGD
        +NF LWQ+ V+D+LIQ GL KALKG+    +P K S +G  +    S   SF       CW CGQ GH +  C     NRASS++GS +D N ++ V+ +
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSNISFK-----NCWECGQPGHMKKSC----PNRASSSKGSGSDANAVSLVSGD

Query:  G
        G
Subjt:  G

PHU07420.1 hypothetical protein BC332_23909 [Capsicum chinense]1.3e-0457.89Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSNISFKNCWE
        +NF LWQVQVKDVLIQSGLHKALK R + G  +K S     +E S  S IS +  WE
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSNISFKNCWE

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.6e-1077.55Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSN
        +NF LWQVQVKDVLIQS LHKALKGR S+G  EKLS DGGP ESSG S+
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSN

XP_022154929.1 uncharacterized protein LOC111022075 [Momordica charantia]1.4e-0973.47Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSN
        +NF LWQVQVKDV+IQSGLHKALKGR S+   EKLS DGGP ESS  S+
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSN

TrEMBL top hitse value%identityAlignment
A0A2G3BLS3 Uncharacterized protein6.5e-0557.89Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSNISFKNCWE
        +NF LWQVQVKDVLIQSGLHKALK R + G  +K S     +E S  S IS +  WE
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSNISFKNCWE

A0A2N9GSE2 Uncharacterized protein3.8e-0534.82Show/hide
Query:  NFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSD------------GGPTESSGSSNISFKN------CWECGQPGHMKKSCPNRASSSKGSGSDAN
        NF LWQ +VKD+L+Q GL KAL G++    PEK++ D            G  T +  S+    K+      C++C + GHMK+ CP      + S +  N
Subjt:  NFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSD------------GGPTESSGSSNISFKN------CWECGQPGHMKKSCPNRASSSKGSGSDAN

Query:  AVSLVSGDGDIL
         V+    DGD+L
Subjt:  AVSLVSGDGDIL

A0A6J1CG82 uncharacterized protein LOC1110105217.9e-1177.55Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSN
        +NF LWQVQVKDVLIQS LHKALKGR S+G  EKLS DGGP ESSG S+
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSN

A0A6J1DNQ5 uncharacterized protein LOC1110220756.7e-1073.47Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSN
        +NF LWQVQVKDV+IQSGLHKALKGR S+   EKLS DGGP ESS  S+
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSN

A0A7J7M716 Uncharacterized protein1.3e-0842.57Show/hide
Query:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSNISFK-----NCWECGQPGHMKKSC----PNRASSSKGSGSDANAVSLVSGD
        +NF LWQ+ V+D+LIQ GL KALKG+    +P K S +G  +    S   SF       CW CGQ GH +  C     NRASS++GS +D N ++ V+ +
Subjt:  MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSNISFK-----NCWECGQPGHMKKSC----PNRASSSKGSGSDANAVSLVSGD

Query:  G
        G
Subjt:  G

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTTAGTCTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGGTTACACAAGGCTTTGAAGGGAAGATCGAGTGATGGTGTTCCTGAAAAGTTAAGCAG
TGATGGTGGTCCAACAGAGTCCAGTGGTAGTTCTAACATAAGTTTTAAGAATTGTTGGGAATGTGGACAACCTGGACACATGAAAAAAAGTTGTCCTAACAGAGCAAGTT
CGTCAAAAGGCTCTGGGTCGGATGCTAACGCAGTCTCTCTCGTTAGCGGAGATGGTGACATCTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTTAGTCTGTGGCAAGTGCAAGTCAAAGATGTGTTGATACAATCTGGGTTACACAAGGCTTTGAAGGGAAGATCGAGTGATGGTGTTCCTGAAAAGTTAAGCAG
TGATGGTGGTCCAACAGAGTCCAGTGGTAGTTCTAACATAAGTTTTAAGAATTGTTGGGAATGTGGACAACCTGGACACATGAAAAAAAGTTGTCCTAACAGAGCAAGTT
CGTCAAAAGGCTCTGGGTCGGATGCTAACGCAGTCTCTCTCGTTAGCGGAGATGGTGACATCTTATGA
Protein sequenceShow/hide protein sequence
MNFSLWQVQVKDVLIQSGLHKALKGRSSDGVPEKLSSDGGPTESSGSSNISFKNCWECGQPGHMKKSCPNRASSSKGSGSDANAVSLVSGDGDIL