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Tan0012499 (gene) of Snake gourd v1 genome

Gene IDTan0012499
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNA-directed DNA polymerase
Genome locationLG01:3327868..3328206
RNA-Seq ExpressionTan0012499
SyntenyTan0012499
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039087.1 putative protein phosphatase 2C 25 [Cucumis melo var. makuwa]1.5e-1869.62Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEE-EDEALVVES
        MAYLR ER+P+ SYSKLKPRKIGPY+I +KI  NAYVL+L P I TS TFNV DL +YH PDAAPTIEE EDE   ++S
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEE-EDEALVVES

PKU67703.1 RNA-directed DNA polymerase [Dendrobium catenatum]9.9e-1563.64Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPT
        M  +RRER P G+YSKL PRKIGP+ I +KI++NAYV++LP  IQTS TFNV D+  YHPPD A T
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPT

PKU75011.1 ATP-dependent DNA helicase RecG [Dendrobium catenatum]1.7e-1455Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEEEDEALVVESAE
        M  +RRER+P G+YSKL PRKIGP+ I  KI++NAYV++LP +I TS TFNV D+  YH PD+A  IE   E+   E  E
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEEEDEALVVESAE

PKU86669.1 RNA-directed DNA polymerase [Dendrobium catenatum]1.4e-1658.75Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEEEDEALVVESAE
        M  +RRERHP G+YSKL PRKIGP+ I  KI++NAYV++LPP+I TSPTFNV D+  YHPPD    IE   E+   E  E
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEEEDEALVVESAE

PON53116.1 hypothetical protein PanWU01x14_204960 [Parasponia andersonii]2.2e-1459.38Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAA
        M +LR+ER PVG+YSKLKPRK+GP+ + K+I++NAYV+ LPP++  S TFNV ++  YHPPDA+
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAA

TrEMBL top hitse value%identityAlignment
A0A2I0VWB5 RNA-directed DNA polymerase4.8e-1563.64Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPT
        M  +RRER P G+YSKL PRKIGP+ I +KI++NAYV++LP  IQTS TFNV D+  YHPPD A T
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPT

A0A2I0WH88 ATP-dependent DNA helicase RecG8.2e-1555Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEEEDEALVVESAE
        M  +RRER+P G+YSKL PRKIGP+ I  KI++NAYV++LP +I TS TFNV D+  YH PD+A  IE   E+   E  E
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEEEDEALVVESAE

A0A2I0XFK1 RNA-directed DNA polymerase6.7e-1758.75Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEEEDEALVVESAE
        M  +RRERHP G+YSKL PRKIGP+ I  KI++NAYV++LPP+I TSPTFNV D+  YHPPD    IE   E+   E  E
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEEEDEALVVESAE

A0A2P5BWF4 Uncharacterized protein1.1e-1459.38Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAA
        M +LR+ER PVG+YSKLKPRK+GP+ + K+I++NAYV+ LPP++  S TFNV ++  YHPPDA+
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAA

A0A5D3CWR3 Uncharacterized protein7.1e-1969.62Show/hide
Query:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEE-EDEALVVES
        MAYLR ER+P+ SYSKLKPRKIGPY+I +KI  NAYVL+L P I TS TFNV DL +YH PDAAPTIEE EDE   ++S
Subjt:  MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEE-EDEALVVES

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTACCTTCGACGTGAGAGACATCCTGTGGGTTCATATTCCAAGTTGAAGCCACGAAAGATTGGTCCCTACAGAATAGCAAAAAAAATCAGCAACAATGCTTATGT
TCTTGAGCTCCCTCCAGAAATACAAACTTCACCCACCTTTAATGTTGTTGATCTATGTGTTTATCACCCACCTGATGCTGCTCCAACAATCGAAGAAGAAGATGAAGCAC
TTGTTGTCGAATCGGCGGAAGCGGTCAAAGTCACACCAATGGAAGCAGCCGAAATCGAAGAATTCACTGTGTCTAATAACATGCAGGTGAAGAAAAGAGAGATTCCTTGT
GTAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTACCTTCGACGTGAGAGACATCCTGTGGGTTCATATTCCAAGTTGAAGCCACGAAAGATTGGTCCCTACAGAATAGCAAAAAAAATCAGCAACAATGCTTATGT
TCTTGAGCTCCCTCCAGAAATACAAACTTCACCCACCTTTAATGTTGTTGATCTATGTGTTTATCACCCACCTGATGCTGCTCCAACAATCGAAGAAGAAGATGAAGCAC
TTGTTGTCGAATCGGCGGAAGCGGTCAAAGTCACACCAATGGAAGCAGCCGAAATCGAAGAATTCACTGTGTCTAATAACATGCAGGTGAAGAAAAGAGAGATTCCTTGT
GTAGTTTGA
Protein sequenceShow/hide protein sequence
MAYLRRERHPVGSYSKLKPRKIGPYRIAKKISNNAYVLELPPEIQTSPTFNVVDLCVYHPPDAAPTIEEEDEALVVESAEAVKVTPMEAAEIEEFTVSNNMQVKKREIPC
VV