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Tan0012562 (gene) of Snake gourd v1 genome

Gene IDTan0012562
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationLG04:76062284..76062806
RNA-Seq ExpressionTan0012562
SyntenyTan0012562
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060761.1 formin-like protein 3 [Cucumis melo var. makuwa]3.7e-4668.03Show/hide
Query:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPY-CNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTG
        M   AAI LSF  L   + L  +QTSSPIS+ P++PDAEIKCGSCPCSNPC+QQL PPPPPP PP  C PT+S  PPPPRF YT    +PPPPRF YTTG
Subjt:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPY-CNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTG

Query:  VPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW
        VPGNLY++D NN WYYFS  TG RP M A+VVALGCGAL LM F KW
Subjt:  VPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW

KAG6581215.1 hypothetical protein SDJN03_21217, partial [Cucurbita argyrosperma subsp. sororia]2.2e-4667.81Show/hide
Query:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTGV
        MAP AAI LS   LF F+ L ++Q  SP+ +  +DP++EIKCGSCPCSNPCV+Q PPPPPPP PP C P +  PPPPPRF YT+L S PPPPRFIYTTGV
Subjt:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTGV

Query:  PGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW
        PGNLYQ+D NNRWYYFS  T  +P   A+VVALGCGAL+LM FGKW
Subjt:  PGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW

KAG7017949.1 hypothetical protein SDJN02_19815, partial [Cucurbita argyrosperma subsp. argyrosperma]5.4e-4567.81Show/hide
Query:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTGV
        MAP AAI LS   LF F+ L ++Q  SP  V P+DP++EIKCGSCPCSNPCV+Q PPPPPPP+   C P +  PPPPPRF YT+L S PPPPRFIYTTGV
Subjt:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTGV

Query:  PGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW
        PGNLYQ+D NNRWYYFS  T  +P   A+VVALGCGAL+LM FGKW
Subjt:  PGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW

XP_011651408.1 leucine-rich repeat extensin-like protein 3 [Cucumis sativus]3.1e-4566Show/hide
Query:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQL----PPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIY
        MAP AAI LSF  L   + L  +QTSSPI V P++PDAEIKCGSCPCSNPC+QQL    PPPPPPP P  C PT+S  PPPPRF YTT   +PPPPRF Y
Subjt:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQL----PPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIY

Query:  TTGVPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW
        TTGVPGNLY++D NN WYYFS     RP M A+ VA+GCGAL LM F KW
Subjt:  TTGVPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW

XP_023528316.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]5.7e-4769.18Show/hide
Query:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTGV
        MAP AAI LS   LF F+ L ++Q  SP  V P+DP++EIKCGSCPCSNPCV+Q PPPPPPP PP C P +  PPPPPRF YT L S PPPPRFIYTTGV
Subjt:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTGV

Query:  PGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW
        PGNLYQ+D NNRWYYFS  T  RP    +VVALGCGAL+LM FGKW
Subjt:  PGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW

TrEMBL top hitse value%identityAlignment
A0A0A0L7R0 Uncharacterized protein1.5e-4566Show/hide
Query:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQL----PPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIY
        MAP AAI LSF  L   + L  +QTSSPI V P++PDAEIKCGSCPCSNPC+QQL    PPPPPPP P  C PT+S  PPPPRF YTT   +PPPPRF Y
Subjt:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQL----PPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIY

Query:  TTGVPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW
        TTGVPGNLY++D NN WYYFS     RP M A+ VA+GCGAL LM F KW
Subjt:  TTGVPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW

A0A5A7V4T2 Formin-like protein 31.8e-4668.03Show/hide
Query:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPY-CNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTG
        M   AAI LSF  L   + L  +QTSSPIS+ P++PDAEIKCGSCPCSNPC+QQL PPPPPP PP  C PT+S  PPPPRF YT    +PPPPRF YTTG
Subjt:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPY-CNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTG

Query:  VPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW
        VPGNLY++D NN WYYFS  TG RP M A+VVALGCGAL LM F KW
Subjt:  VPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW

A0A6J1GAW3 leucine-rich repeat extensin-like protein 24.2e-3564.86Show/hide
Query:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCP-CSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTG
        MAP AAIFLS LL F        QTS PIS SP DPD EI C S   CSNP VQQL P PP P PP          PPPRFTYTTL S PPP RFIYTTG
Subjt:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCP-CSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTG

Query:  VPGNLYQVDENNRWYYFSDATGKRPTMVAM-VVALGCGALDLMVFGKW
        VP +LYQ DE NRWYYFS A GK P M A+ VV L CGALDL+VFGKW
Subjt:  VPGNLYQVDENNRWYYFSDATGKRPTMVAM-VVALGCGALDLMVFGKW

A0A6J1J7W0 probable pathogenesis-related protein ARB_028611.7e-4468.49Show/hide
Query:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTGV
        MAP AAI LS   LF F+ L  +Q  SP  V P+DP++EIKCGSCPCSNPCV+Q PPPPPPP PP C P +  PPPPPRF YT+L S PPPPRFIYTTGV
Subjt:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTGV

Query:  PGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW
        PGNLYQ+D NNRWYYFS  T       A+VVALGCGAL+LM FGKW
Subjt:  PGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW

A0A6J1KHA8 leucine-rich repeat extensin-like protein 31.1e-2263.48Show/hide
Query:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGS-CPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTG
        MAP AAIFLS LL F        Q S PI  SP DP AEI CGS  PCSNP VQQL P PP P PP          PPPRFTYTTL S PPPP+FIYTTG
Subjt:  MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGS-CPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTG

Query:  VPGNLYQVDENNRWY
        VP +LYQ DE NRWY
Subjt:  VPGNLYQVDENNRWY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02405.1 proline-rich family protein4.0e-0639.33Show/hide
Query:  SSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPS------SPPPPRFIYTTGVPGNLYQVD
        +SPI ++ ED  AE+         PC+Q  PPPPP P PP C P+   P PPP    +  PS       PPPP +++T   PG+LY ++
Subjt:  SSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPS------SPPPPRFIYTTGVPGNLYQVD

AT1G23040.1 hydroxyproline-rich glycoprotein family protein3.9e-0935.97Show/hide
Query:  IFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPP-PPPPS--PPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTGVPGN
        + +  LL  P +  G + + + +     D    IK     CS  C+Q  PPP PPPPS  PP C P  + PPPPP+   +  P  PPP  F+Y TG PGN
Subjt:  IFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPP-PPPPS--PPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTGVPGN

Query:  LYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMV
        LY VDE      F  A GK   +V +   +  G +  ++
Subjt:  LYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMV

AT1G70990.1 proline-rich family protein3.6e-0735.86Show/hide
Query:  LAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPP-PPPPSPPYCNPTMSHPPP-----PPRFTYTTLPSSPPPPRFIYT
        LAA  L+ ++   F  +  A  SS      EDP   IKC       PC+Q +PPP PPPPSPP   P+ + PPP     PP+ +Y      PPP  +IY 
Subjt:  LAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPP-PPPPSPPYCNPTMSHPPP-----PPRFTYTTLPSSPPPPRFIYT

Query:  TGVPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMV
        TG PG LY +D+      F  A  K  T+V +   +  G +  ++
Subjt:  TGVPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALDLMV

AT3G03350.1 NAD(P)-binding Rossmann-fold superfamily protein1.8e-0654.55Show/hide
Query:  PPPPRFTY-TTLPSSPPPPRFIYTTGVPGNLYQVDENNRWYYFS
        PPPPR TY +   SSPPPP+++Y TGVPG LY+ + +++W Y S
Subjt:  PPPPRFTY-TTLPSSPPPPRFIYTTGVPGNLYQVDENNRWYYFS

AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein2.5e-0840.91Show/hide
Query:  PPPPRFTY-TTLPSSPPPPRFIYTTGVPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALD
        PPPPR TY +   SSPPPP+++Y TGVPG LY+ + +++W Y S         + ++V +G G ++
Subjt:  PPPPRFTY-TTLPSSPPPPRFIYTTGVPGNLYQVDENNRWYYFSDATGKRPTMVAMVVALGCGALD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCTTTGGCCGCCATTTTTCTCTCTTTCTTACTTCTCTTCCCTTTCATTTTCCTCGGCGAGGCCCAAACCTCCTCGCCGATATCGGTCAGTCCGGAAGATCCCGA
CGCAGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTCAGCAATTGCCACCGCCACCGCCACCGCCATCACCACCGTACTGTAACCCAACGATGTCGCATC
CACCACCGCCTCCGAGGTTTACTTATACGACATTACCATCCTCACCACCACCTCCGAGGTTTATTTATACAACAGGCGTTCCCGGTAACCTGTACCAGGTTGACGAGAAT
AATCGTTGGTATTACTTCTCCGACGCAACGGGGAAGCGCCCGACCATGGTGGCTATGGTGGTGGCGCTTGGCTGTGGAGCTTTGGATCTCATGGTGTTTGGTAAGTGGTA
A
mRNA sequenceShow/hide mRNA sequence
CATCTTCACATTAAATCTCTCTCTGCAAACTCAATCCTCCTTGATTTCAGAGCTTCTTCTACCTGAAAATGGCGCCTTTGGCCGCCATTTTTCTCTCTTTCTTACTTCTC
TTCCCTTTCATTTTCCTCGGCGAGGCCCAAACCTCCTCGCCGATATCGGTCAGTCCGGAAGATCCCGACGCAGAAATAAAATGTGGATCATGCCCTTGTTCCAACCCATG
TGTTCAGCAATTGCCACCGCCACCGCCACCGCCATCACCACCGTACTGTAACCCAACGATGTCGCATCCACCACCGCCTCCGAGGTTTACTTATACGACATTACCATCCT
CACCACCACCTCCGAGGTTTATTTATACAACAGGCGTTCCCGGTAACCTGTACCAGGTTGACGAGAATAATCGTTGGTATTACTTCTCCGACGCAACGGGGAAGCGCCCG
ACCATGGTGGCTATGGTGGTGGCGCTTGGCTGTGGAGCTTTGGATCTCATGGTGTTTGGTAAGTGGTAAAGGATGAATAGAAT
Protein sequenceShow/hide protein sequence
MAPLAAIFLSFLLLFPFIFLGEAQTSSPISVSPEDPDAEIKCGSCPCSNPCVQQLPPPPPPPSPPYCNPTMSHPPPPPRFTYTTLPSSPPPPRFIYTTGVPGNLYQVDEN
NRWYYFSDATGKRPTMVAMVVALGCGALDLMVFGKW