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Tan0012581 (gene) of Snake gourd v1 genome

Gene IDTan0012581
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibonuclease H
Genome locationLG04:56952094..56954979
RNA-Seq ExpressionTan0012581
SyntenyTan0012581
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150028.1 uncharacterized protein LOC111018300 [Momordica charantia]4.2e-3742.31Show/hide
Query:  LPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQD---------ETQAP---------GPAGGES
        +P E++LMEI++  L+++P++M AP  +R   +YC+FHRDH +AT + + L+ E++ LI+ GY+KEYV+D         ++++P         GP   E 
Subjt:  LPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQD---------ETQAP---------GPAGGES

Query:  NRKRKAIAREARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGF
         RKRKA  RE R +     I+      +   + F++ EA  +  PHND LV+TL IAN KVHRIL+DGGSSAD++S TA+ AM L     K +   LV F
Subjt:  NRKRKAIAREARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGF

Query:  GGERVTPE
         GERV PE
Subjt:  GGERVTPE

XP_022155873.1 uncharacterized protein LOC111022886 [Momordica charantia]3.8e-3846.39Show/hide
Query:  TSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQDETQAPGPAGGESNRKRKAIAREARQN
        T TT+  E++LMEI+   L+K+P++M+APP +R   +Y +FHRDHG+AT + + L++E+E LIR GY+KEYV+D  +A      +SN   + I     + 
Subjt:  TSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQDETQAPGPAGGESNRKRKAIAREARQN

Query:  PYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE
        P                L F++ EA  +  PHNDALV+TL IAN KVHRIL+DGGSS  ++S TA+ AM L    LK +  PLVGFGGERV PE
Subjt:  PYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE

XP_022156748.1 uncharacterized protein LOC111023587 [Momordica charantia]1.4e-4047.69Show/hide
Query:  YTSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQDETQAPGPAGGESNRKRKAIAREARQ
        YT TT+P E++LMEI+   L+K+P++M+AP  +R   +YC+FHRDH +AT + + L++E+E LIR GY+KE    E             K+KA  REAR 
Subjt:  YTSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQDETQAPGPAGGESNRKRKAIAREARQ

Query:  NPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE
        N     ++  +      T+ F++ EA  +   HNDALV+TL IANVKVHRIL+DGGSSAD++S TA+ AM L   +LK +  PLVGFGGERV  E
Subjt:  NPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE

XP_022158621.1 uncharacterized protein LOC111025072 [Momordica charantia]1.2e-3644.04Show/hide
Query:  MEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQD-----------------ETQAPGPAGGESNRKRKAIA
        MEI+   L+K+P++M+AP  +R   +YC+FHRDHG+AT + + L +E+E LIR GY++EYV++                  T   GP   ES RKRKA  
Subjt:  MEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQD-----------------ETQAPGPAGGESNRKRKAIA

Query:  REARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFG
        +EAR N     ++  +      T+ F++ EA  +  PHNDAL +TL IANVKVHRIL+DGG+ AD++S TA+N M L   +LK +  PL GFG
Subjt:  REARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFG

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.8e-4644.17Show/hide
Query:  RPDNGRGRPEEYRSKPDNRVVPNQPFERYTSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEY
        +P   R    +  S+ D    P + FE+YT TT+P E++LMEI+   L+K+P++M+A   +R   +YC+FHRDHG+AT + + L++E+E LIR GY+KEY
Subjt:  RPDNGRGRPEEYRSKPDNRVVPNQPFERYTSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEY

Query:  VQD-----------------ETQAPGPAGGESNRKRKAIAREARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDG
        V++                  T   GP   ES RKRKA  REAR +     ++  +      T+ F++ EA  +  PHNDALV+ L IANVKVHR+L+DG
Subjt:  VQD-----------------ETQAPGPAGGESNRKRKAIAREARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDG

Query:  GSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE
        GSSAD++S TA+ AM L   +LK +  PLVGFG ERV PE
Subjt:  GSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE

TrEMBL top hitse value%identityAlignment
A0A6J1D8C9 uncharacterized protein LOC1110183002.0e-3742.31Show/hide
Query:  LPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQD---------ETQAP---------GPAGGES
        +P E++LMEI++  L+++P++M AP  +R   +YC+FHRDH +AT + + L+ E++ LI+ GY+KEYV+D         ++++P         GP   E 
Subjt:  LPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQD---------ETQAP---------GPAGGES

Query:  NRKRKAIAREARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGF
         RKRKA  RE R +     I+      +   + F++ EA  +  PHND LV+TL IAN KVHRIL+DGGSSAD++S TA+ AM L     K +   LV F
Subjt:  NRKRKAIAREARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGF

Query:  GGERVTPE
         GERV PE
Subjt:  GGERVTPE

A0A6J1DP33 uncharacterized protein LOC1110228861.8e-3846.39Show/hide
Query:  TSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQDETQAPGPAGGESNRKRKAIAREARQN
        T TT+  E++LMEI+   L+K+P++M+APP +R   +Y +FHRDHG+AT + + L++E+E LIR GY+KEYV+D  +A      +SN   + I     + 
Subjt:  TSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQDETQAPGPAGGESNRKRKAIAREARQN

Query:  PYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE
        P                L F++ EA  +  PHNDALV+TL IAN KVHRIL+DGGSS  ++S TA+ AM L    LK +  PLVGFGGERV PE
Subjt:  PYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE

A0A6J1DRG9 uncharacterized protein LOC1110235876.7e-4147.69Show/hide
Query:  YTSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQDETQAPGPAGGESNRKRKAIAREARQ
        YT TT+P E++LMEI+   L+K+P++M+AP  +R   +YC+FHRDH +AT + + L++E+E LIR GY+KE    E             K+KA  REAR 
Subjt:  YTSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQDETQAPGPAGGESNRKRKAIAREARQ

Query:  NPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE
        N     ++  +      T+ F++ EA  +   HNDALV+TL IANVKVHRIL+DGGSSAD++S TA+ AM L   +LK +  PLVGFGGERV  E
Subjt:  NPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE

A0A6J1DWY0 uncharacterized protein LOC1110252931.4e-4644.58Show/hide
Query:  RPDNGRGRPEEYRSKPDNRVVPNQPFERYTSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEY
        +P   R    +  S+ D    P + FE+YT TT+P E++LMEI+   L+K+P++M+A   +R   +YC+FHRDHG+AT + + L++E+E LIR GY+KEY
Subjt:  RPDNGRGRPEEYRSKPDNRVVPNQPFERYTSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEY

Query:  VQD-----------------ETQAPGPAGGESNRKRKAIAREARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDG
        V++                  T   GP   ES RKRKA  REAR +     ++  +      T+ F++ EA  +  PHNDALV+ L IANVKVHR+L+DG
Subjt:  VQD-----------------ETQAPGPAGGESNRKRKAIAREARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDG

Query:  GSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE
        GSSAD+LS TA+ AM L   +LK +  PLVGFG ERV PE
Subjt:  GSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPE

A0A6J1E1G3 uncharacterized protein LOC1110250725.9e-3744.04Show/hide
Query:  MEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQD-----------------ETQAPGPAGGESNRKRKAIA
        MEI+   L+K+P++M+AP  +R   +YC+FHRDHG+AT + + L +E+E LIR GY++EYV++                  T   GP   ES RKRKA  
Subjt:  MEIRHLNLVKFPKKMRAPPGRRDPAKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQD-----------------ETQAPGPAGGESNRKRKAIA

Query:  REARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFG
        +EAR N     ++  +      T+ F++ EA  +  PHNDAL +TL IANVKVHRIL+DGG+ AD++S TA+N M L   +LK +  PL GFG
Subjt:  REARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANVKVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGTAGAAGACTTATTGCGATCAAAAGAGGTCCCTGGTCAAGAAAAGAATGACAAAAGCGTGGATCCAGCTGGAACACGGAACTATTCCTCGACAGTCTCCAAAAG
AAGAAAAGTCGAAGAAGGTGGCCGAGGCCGACCAGATAATGGCCGAGGACGACCAGAGGAGTACCGAAGTAAACCAGATAATCGAGTGGTCCCAAATCAACCATTCGAAA
GGTACACTTCCACGACTCTTCCTCCAGAAAAGATCTTGATGGAGATTCGACATTTGAATCTCGTGAAATTCCCTAAAAAGATGAGAGCTCCACCTGGAAGACGAGACCCA
GCCAAATACTGCATGTTCCATAGGGATCACGGGTACGCCACCTCCAATTTCTACCAACTCCGAGACGAAATAGAAACCCTAATCAGAGAAGGGTACATGAAAGAGTACGT
CCAGGACGAAACTCAGGCTCCAGGACCAGCTGGAGGCGAATCCAACAGAAAGAGGAAGGCAATCGCTCGTGAAGCTCGACAAAATCCTTACTATCAAGGTATCTTTTCAG
TCCATCCAGGGGTGGAAGACCAAACCCTCGGGTTCACAAAGACTGAAGCTAGAGCGATCCATCAACCACACAATGATGCATTAGTAGTGACACTTGCCATAGCCAATGTG
AAAGTTCACAGAATACTCATAGATGGAGGAAGCTCAGCCGACGTCCTATCTTCAACCGCTTTCAATGCCATGAAATTAGCAAGGGGGCTTCTAAAAGAAAATTTAACCCC
CCTAGTTGGTTTTGGCGGAGAAAGGGTTACCCCTGAAGAAAAAAAGCTAAATATGAAAAGGCAGCGAAAAGTAAAGTTCGCAGCCGCGACGAGGAGGAGGCCACCACCAA
GACGGATGAGACCGGTAGAAACTCTTACCTTCGAAAAGGGGAGGAGGCACGAAACCAATTCTTTCAAGATTCTCTTGACTCACAATAGCAGCCCCGAGTCGGGAGGGAGC
TCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGTAGAAGACTTATTGCGATCAAAAGAGGTCCCTGGTCAAGAAAAGAATGACAAAAGCGTGGATCCAGCTGGAACACGGAACTATTCCTCGACAGTCTCCAAAAG
AAGAAAAGTCGAAGAAGGTGGCCGAGGCCGACCAGATAATGGCCGAGGACGACCAGAGGAGTACCGAAGTAAACCAGATAATCGAGTGGTCCCAAATCAACCATTCGAAA
GGTACACTTCCACGACTCTTCCTCCAGAAAAGATCTTGATGGAGATTCGACATTTGAATCTCGTGAAATTCCCTAAAAAGATGAGAGCTCCACCTGGAAGACGAGACCCA
GCCAAATACTGCATGTTCCATAGGGATCACGGGTACGCCACCTCCAATTTCTACCAACTCCGAGACGAAATAGAAACCCTAATCAGAGAAGGGTACATGAAAGAGTACGT
CCAGGACGAAACTCAGGCTCCAGGACCAGCTGGAGGCGAATCCAACAGAAAGAGGAAGGCAATCGCTCGTGAAGCTCGACAAAATCCTTACTATCAAGGTATCTTTTCAG
TCCATCCAGGGGTGGAAGACCAAACCCTCGGGTTCACAAAGACTGAAGCTAGAGCGATCCATCAACCACACAATGATGCATTAGTAGTGACACTTGCCATAGCCAATGTG
AAAGTTCACAGAATACTCATAGATGGAGGAAGCTCAGCCGACGTCCTATCTTCAACCGCTTTCAATGCCATGAAATTAGCAAGGGGGCTTCTAAAAGAAAATTTAACCCC
CCTAGTTGGTTTTGGCGGAGAAAGGGTTACCCCTGAAGAAAAAAAGCTAAATATGAAAAGGCAGCGAAAAGTAAAGTTCGCAGCCGCGACGAGGAGGAGGCCACCACCAA
GACGGATGAGACCGGTAGAAACTCTTACCTTCGAAAAGGGGAGGAGGCACGAAACCAATTCTTTCAAGATTCTCTTGACTCACAATAGCAGCCCCGAGTCGGGAGGGAGC
TCCTAA
Protein sequenceShow/hide protein sequence
MSVEDLLRSKEVPGQEKNDKSVDPAGTRNYSSTVSKRRKVEEGGRGRPDNGRGRPEEYRSKPDNRVVPNQPFERYTSTTLPPEKILMEIRHLNLVKFPKKMRAPPGRRDP
AKYCMFHRDHGYATSNFYQLRDEIETLIREGYMKEYVQDETQAPGPAGGESNRKRKAIAREARQNPYYQGIFSVHPGVEDQTLGFTKTEARAIHQPHNDALVVTLAIANV
KVHRILIDGGSSADVLSSTAFNAMKLARGLLKENLTPLVGFGGERVTPEEKKLNMKRQRKVKFAAATRRRPPPRRMRPVETLTFEKGRRHETNSFKILLTHNSSPESGGS
S