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Tan0012649 (gene) of Snake gourd v1 genome

Gene IDTan0012649
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon gag protein
Genome locationLG01:43751636..43796167
RNA-Seq ExpressionTan0012649
SyntenyTan0012649
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025376.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-1761.7Show/hide
Query:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL
        +S+AT  EENQ  T    R STF+RLS STSKKDRPSTS FDRLK+T+DQ +++MKS K + F E N  +K+ S VPS MK+K FV INTEGSL
Subjt:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL

KAA0032650.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.7e-1964.89Show/hide
Query:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL
        +S+AT  EENQ LT    R STF+RLS STSKKDRPSTS FD LK+T+DQ ++++KSLKE+ F E N  +K+ S VPSHMKRK FV INTEGSL
Subjt:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL

KAA0035317.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.0e-1857.28Show/hide
Query:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSLKWCLRD
        +SIAT  EENQ LT    R STF+RLS STSKKDRPSTS FDRLK+T+DQ ++++KSLK + F E N  +K+ S VPS MKRK  V INTEG++   L++
Subjt:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSLKWCLRD

Query:  LNK
        +++
Subjt:  LNK

KAA0048558.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.2e-1950.39Show/hide
Query:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSLKWCLRD
        +S+AT  EENQ  T    R S F+RLS STSKKDRPSTS FDRLK+T+DQ +++MKSLK + F + N  +K+ S +PSHMKRK FV INTEG++   L++
Subjt:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSLKWCLRD

Query:  LNKG---LDPLIGPRGTLFVGRTTNKLFI
        +++    L  ++  R  LFV  T  ++FI
Subjt:  LNKG---LDPLIGPRGTLFVGRTTNKLFI

KAA0059024.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.9e-1862.77Show/hide
Query:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL
        +S+AT  EENQ  T    R STF+RLS STSKKDRPSTS FDRLK+T+DQ +++MKSLK + F E N ++K+ S VPS MKRK  V INTEGSL
Subjt:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SHQ6 Retrotransposon gag protein1.3e-1761.7Show/hide
Query:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL
        +S+AT  EENQ  T    R STF+RLS STSKKDRPSTS FDRLK+T+DQ +++MKS K + F E N  +K+ S VPS MK+K FV INTEGSL
Subjt:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL

A0A5A7SP56 Retrotransposon gag protein2.3e-1964.89Show/hide
Query:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL
        +S+AT  EENQ LT    R STF+RLS STSKKDRPSTS FD LK+T+DQ ++++KSLKE+ F E N  +K+ S VPSHMKRK FV INTEGSL
Subjt:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL

A0A5A7T146 Retrotransposon gag protein1.9e-1857.28Show/hide
Query:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSLKWCLRD
        +SIAT  EENQ LT    R STF+RLS STSKKDRPSTS FDRLK+T+DQ ++++KSLK + F E N  +K+ S VPS MKRK  V INTEG++   L++
Subjt:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSLKWCLRD

Query:  LNK
        +++
Subjt:  LNK

A0A5A7UV73 Retrotransposon gag protein4.3e-1862.77Show/hide
Query:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL
        +S+AT  EENQ  T    R STF+RLS STSKKDRPSTS FDRLK+T+DQ +++MKSLK + F E N ++K+ S VPS MKRK  V INTEGSL
Subjt:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSL

A0A5D3DYN4 Retrotransposon gag protein3.0e-1950.39Show/hide
Query:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSLKWCLRD
        +S+AT  EENQ  T    R S F+RLS STSKKDRPSTS FDRLK+T+DQ +++MKSLK + F + N  +K+ S +PSHMKRK FV INTEG++   L++
Subjt:  MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVN-HNKVQSTVPSHMKRKFFVLINTEGSLKWCLRD

Query:  LNKG---LDPLIGPRGTLFVGRTTNKLFI
        +++    L  ++  R  LFV  T  ++FI
Subjt:  LNKG---LDPLIGPRGTLFVGRTTNKLFI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATAGCCACGACGAACGAAGAAAACCAAGACCTAACTTCTTTCTTACCTCGACCTTCGACCTTCCAAAGGTTAAGTGCCTCCACATCAAAGAAAGATCGACCTTC
AACATCTCTTTTTGATCGCCTCAAAGTAACAAGCGATCAACATGAAAAAAAGATGAAATCCTTGAAGGAAGAACTGTTCGATGAGGTGAACCACAACAAGGTTCAAAGTA
CCGTCCCTTCACATATGAAAAGGAAGTTCTTCGTTCTCATAAATACAGAGGGTTCCTTAAAGTGGTGTCTTCGGGACTTGAACAAAGGGCTTGACCCTCTCATTGGCCCG
AGAGGGACTCTGTTTGTTGGTAGGACCACAAACAAATTGTTCATTAGAGGAGCACTGGGCATAAAGTGCATACAACAAAGCGGCGTTTGTAACGCGCTCCCCTCGGCCGG
GCATTGCAACGCGCCGCCTCGGCGTTACAACGCCATCCCGATAAGAAAGCGCAAGATACGACAAAGCGGGCGTTACAACGCGGCATCGCGACCATTGGGACATGAGATGT
TCAGCAATGAATGGCGTGAGACAAGGACCAATGGATCAAAGCCATGGACCTTGAAATGGAGTCAATGGACTTCAATTCGGTATGGGAGCTTGGTTTTACCCAAAGGGAAG
GAATTGACTATGAAGAAACTTTTTCCCCTGTTGCTATGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATAGCCACGACGAACGAAGAAAACCAAGACCTAACTTCTTTCTTACCTCGACCTTCGACCTTCCAAAGGTTAAGTGCCTCCACATCAAAGAAAGATCGACCTTC
AACATCTCTTTTTGATCGCCTCAAAGTAACAAGCGATCAACATGAAAAAAAGATGAAATCCTTGAAGGAAGAACTGTTCGATGAGGTGAACCACAACAAGGTTCAAAGTA
CCGTCCCTTCACATATGAAAAGGAAGTTCTTCGTTCTCATAAATACAGAGGGTTCCTTAAAGTGGTGTCTTCGGGACTTGAACAAAGGGCTTGACCCTCTCATTGGCCCG
AGAGGGACTCTGTTTGTTGGTAGGACCACAAACAAATTGTTCATTAGAGGAGCACTGGGCATAAAGTGCATACAACAAAGCGGCGTTTGTAACGCGCTCCCCTCGGCCGG
GCATTGCAACGCGCCGCCTCGGCGTTACAACGCCATCCCGATAAGAAAGCGCAAGATACGACAAAGCGGGCGTTACAACGCGGCATCGCGACCATTGGGACATGAGATGT
TCAGCAATGAATGGCGTGAGACAAGGACCAATGGATCAAAGCCATGGACCTTGAAATGGAGTCAATGGACTTCAATTCGGTATGGGAGCTTGGTTTTACCCAAAGGGAAG
GAATTGACTATGAAGAAACTTTTTCCCCTGTTGCTATGCTGA
Protein sequenceShow/hide protein sequence
MSIATTNEENQDLTSFLPRPSTFQRLSASTSKKDRPSTSLFDRLKVTSDQHEKKMKSLKEELFDEVNHNKVQSTVPSHMKRKFFVLINTEGSLKWCLRDLNKGLDPLIGP
RGTLFVGRTTNKLFIRGALGIKCIQQSGVCNALPSAGHCNAPPRRYNAIPIRKRKIRQSGRYNAASRPLGHEMFSNEWRETRTNGSKPWTLKWSQWTSIRYGSLVLPKGK
ELTMKKLFPLLLC