CuGenDBv2

Gene ID	Tan0012679
Organism	Trichosanthes anguina (Snake gourd v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
Genome location	LG06:15385484..15388948
RNA-Seq Expression	Tan0012679
Synteny	Tan0012679
Gene Ontology terms	GO:0010027 - thylakoid membrane organization (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domains	IPR040003 - Plastoglobular protein 18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004139667.1 uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]

5.2e-58

72.78

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSGV  SVS S FSL+ TKPKITH S  S++LF+SS TPSNLKFRGIS F+P G  RF+A CSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQDPDSGNTVNQDPIIGE
         IGRLQAEQQK++ DFQ+EVIERAKKAK+KAA ++KE++G VSSS+I+P +EV SSPT+S+   D DS + VNQDP +GE
Subjt:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQDPDSGNTVNQDPIIGE

XP_008447268.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo]

1.2e-54

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSS +  SVS S FSL+ TKPKITH SS S++ F+SS TPSNL+FRGIS F+P GS R +A CSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQDPDSGNTVNQDPIIGE
         IG+LQAEQQK++ DFQ+EVIERAKKAK+KAA EAKE++  VSSS+I+P++EV SSPT+S+   D +SG  VNQDP +G+
Subjt:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQDPDSGNTVNQDPIIGE

XP_023005089.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima]

5.6e-52

68.62

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+SGV PSVSPSHFS+LH+KPKITH SS           PSNLKFR IS   PIGSPRFV  CSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEG--SVSSSIIAPSMEVVSSPTTSTIGQ-----DPDSGNTVNQDPIIGEE
         IGRLQAEQQK++LDFQEEVIERAKKA++KAA +AKE++G  S SSSI +P++EV SS TTST  Q       DSG   NQDP +G+E
Subjt:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEG--SVSSSIIAPSMEVVSSPTTSTIGQ-----DPDSGNTVNQDPIIGEE

XP_023514675.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pepo]

9.6e-52

68.62

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+SGV PSVSPSHFS+LH+KPKITH SS           PSNLKFR IS   PIGSPRFV  CSSGDGDSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEG--SVSSSIIAPSMEVVSSPTTSTIGQD-----PDSGNTVNQDPIIGEE
         IGRLQAEQQK++LDFQEEVIERAKKA++KAA +AKE++G  S SSSI +P++EV SS T+ST  Q       DSG   NQDP +G E
Subjt:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEG--SVSSSIIAPSMEVVSSPTTSTIGQD-----PDSGNTVNQDPIIGEE

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]

7.3e-60

73.12

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSGV  SVS S FSL+ TKPKITH SS S++LF+SS TPSNLKFR IS F+P GSPRF+A CSSGDGDSRTVLDAFFLGKALAEALTERIEST+GEVL 
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQ-----DPDSGNTVNQDPIIGEE
         IGRLQAEQQK++ DFQEEVIERAKKAKDKAA +AKE++G VSSSI +P++EV SSPT ST  Q     D DS   VNQDP +G++
Subjt:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQ-----DPDSGNTVNQDPIIGEE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6Q2 Uncharacterized protein

2.5e-58

72.78

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSGV  SVS S FSL+ TKPKITH S  S++LF+SS TPSNLKFRGIS F+P G  RF+A CSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQDPDSGNTVNQDPIIGE
         IGRLQAEQQK++ DFQ+EVIERAKKAK+KAA ++KE++G VSSS+I+P +EV SSPT+S+   D DS + VNQDP +GE
Subjt:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQDPDSGNTVNQDPIIGE

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X1

5.9e-55

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSS +  SVS S FSL+ TKPKITH SS S++ F+SS TPSNL+FRGIS F+P GS R +A CSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQDPDSGNTVNQDPIIGE
         IG+LQAEQQK++ DFQ+EVIERAKKAK+KAA EAKE++  VSSS+I+P++EV SSPT+S+   D +SG  VNQDP +G+
Subjt:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQDPDSGNTVNQDPIIGE

A0A6J1H854 uncharacterized protein At4g13200, chloroplastic-like

2.3e-51

68.09

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+SGV PSVSPSHFS+LH+KPKITH SS           PSNLKFR IS   PIGSPRFV  CSSGDGDSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEG--SVSSSIIAPSMEVVSSPTTSTIGQD-----PDSGNTVNQDPIIGEE
         IGRLQAEQQK+ LDFQEEV+ERAKKA++KAA +AKE++G  S SSSI +P++EV SS T+ST  Q       DSG   NQDP +G E
Subjt:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEG--SVSSSIIAPSMEVVSSPTTSTIGQD-----PDSGNTVNQDPIIGEE

A0A6J1JX27 uncharacterized protein At4g13200, chloroplastic-like

6.7e-51

65.59

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSGV  SVSPS FS+L T+ KITHCSS S+V F+SS T SNLK      FRP GS RF+A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+GEVL 
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQDPDSGN-----TVNQDPIIGEE
        EIGRLQAE+Q++++DFQEEVIERAKKAK+KA  +AKE +G +SSSI++ ++EV SSPT S+ GQ   S N      VNQDP  G+E
Subjt:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQDPDSGN-----TVNQDPIIGEE

A0A6J1KY61 uncharacterized protein At4g13200, chloroplastic-like

2.7e-52

68.62

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+SGV PSVSPSHFS+LH+KPKITH SS           PSNLKFR IS   PIGSPRFV  CSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEG--SVSSSIIAPSMEVVSSPTTSTIGQ-----DPDSGNTVNQDPIIGEE
         IGRLQAEQQK++LDFQEEVIERAKKA++KAA +AKE++G  S SSSI +P++EV SS TTST  Q       DSG   NQDP +G+E
Subjt:  EIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEG--SVSSSIIAPSMEVVSSPTTSTIGQ-----DPDSGNTVNQDPIIGEE

SwissProt top hits

e value

%identity

Alignment

P73628 Thylakoid protein sll1769

7.7e-04

31.82

Show/hide

Query:  VLDAFFLGKALAEALTERIESTIGEVLGEIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTS
        VL AFFLG+A AE L+E++E  +   L E+G+  AEQ++ +  F  EV  RA     +       ++G VS+  +  +++ + +   S
Subjt:  VLDAFFLGKALAEALTERIESTIGEVLGEIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTS

Q8LDV3 Uncharacterized protein At4g13200, chloroplastic

6.3e-22

47.67

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCS-----SGDGDSRTVLDAFFLGKALAEALTERIESTI
        MSS  +P  SPS FSL ++  + T   S ++   +S+F    L+    SR R   S    ++CS     SG+ ++++VLDAFFLGKALAE + ERIEST+
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCS-----SGDGDSRTVLDAFFLGKALAEALTERIESTI

Query:  GEVLGEIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIA----PSMEVVSSPT-TSTI
        GEVL  IG+ QAEQQK+V + QEEV+ERAKKAK++AA E  E +G V+S  +A    P   VV+S T TST+
Subjt:  GEVLGEIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIA----PSMEVVSSPT-TSTI

Arabidopsis top hits

e value

%identity

Alignment

AT4G13200.1 unknown protein

4.5e-23

47.67

Show/hide

Query:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCS-----SGDGDSRTVLDAFFLGKALAEALTERIESTI
        MSS  +P  SPS FSL ++  + T   S ++   +S+F    L+    SR R   S    ++CS     SG+ ++++VLDAFFLGKALAE + ERIEST+
Subjt:  MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCS-----SGDGDSRTVLDAFFLGKALAEALTERIESTI

Query:  GEVLGEIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIA----PSMEVVSSPT-TSTI
        GEVL  IG+ QAEQQK+V + QEEV+ERAKKAK++AA E  E +G V+S  +A    P   VV+S T TST+
Subjt:  GEVLGEIGRLQAEQQKKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIA----PSMEVVSSPT-TSTI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGTAGTGGGGTTATGCCTTCGGTTTCCCCATCCCATTTCTCACTTCTTCACACTAAACCAAAAATTACCCATTGTTCGTCTTCATCCGTCGTTCTATTTCAATCCTC
TTTCACTCCATCGAATCTCAAATTTCGAGGAATTTCACGTTTTCGACCAATTGGGTCTCCCAGATTCGTAGCCCATTGCAGCTCCGGTGATGGTGACAGCAGGACTGTTC
TAGATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACTGAGCGTATTGAGTCAACAATTGGAGAAGTTTTGGGTGAGATTGGTAGGCTGCAAGCTGAACAACAA
AAGAAAGTTCTTGATTTCCAGGAGGAGGTGATCGAAAGGGCTAAAAAAGCCAAGGACAAAGCAGCACTAGAAGCCAAAGAATTAGAAGGATCTGTCTCCTCTTCAATAAT
TGCGCCTTCGATGGAAGTTGTTTCATCTCCAACTACTTCAACCATTGGACAAGACCCAGATTCAGGAAATACTGTGAACCAGGATCCTATTATTGGTGAAGAGTAA

mRNA sequence

Show/hide mRNA sequence

CCCACCAAAGATCTTTCTTTATATATTCGTGTTTGGCTGTCGAGAAAATGAGCGAGAAACGCTGAGAAAGTGGCGCCATATATTTTTCCATTCCCATCGCACAAAATGAG
TAGTGGGGTTATGCCTTCGGTTTCCCCATCCCATTTCTCACTTCTTCACACTAAACCAAAAATTACCCATTGTTCGTCTTCATCCGTCGTTCTATTTCAATCCTCTTTCA
CTCCATCGAATCTCAAATTTCGAGGAATTTCACGTTTTCGACCAATTGGGTCTCCCAGATTCGTAGCCCATTGCAGCTCCGGTGATGGTGACAGCAGGACTGTTCTAGAT
GCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACTGAGCGTATTGAGTCAACAATTGGAGAAGTTTTGGGTGAGATTGGTAGGCTGCAAGCTGAACAACAAAAGAA
AGTTCTTGATTTCCAGGAGGAGGTGATCGAAAGGGCTAAAAAAGCCAAGGACAAAGCAGCACTAGAAGCCAAAGAATTAGAAGGATCTGTCTCCTCTTCAATAATTGCGC
CTTCGATGGAAGTTGTTTCATCTCCAACTACTTCAACCATTGGACAAGACCCAGATTCAGGAAATACTGTGAACCAGGATCCTATTATTGGTGAAGAGTAATCATCTCTA
TGGCAATTTCTCTTTGGTTATAGACTTATAGTGAATGTAACCTATATACTTATGTTTATGATAAGTTGGTTATTTGGTCTCAAAATCATACAGTAAATTGTCTTCTCAAG
GTTCGTCTTTTAGATATCTTATGAGTTTCTTGACGTTGAATATTGTCCGACCAAAACCCGTTTAGTAAGATTACTTCAAGGTTTAAG

Protein sequence

Show/hide protein sequence

MSSGVMPSVSPSHFSLLHTKPKITHCSSSSVVLFQSSFTPSNLKFRGISRFRPIGSPRFVAHCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGEIGRLQAEQQ
KKVLDFQEEVIERAKKAKDKAALEAKELEGSVSSSIIAPSMEVVSSPTTSTIGQDPDSGNTVNQDPIIGEE

Tan0012679 (gene) of Snake gourd v1 genome