; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0012696 (gene) of Snake gourd v1 genome

Gene IDTan0012696
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposable element Tf2
Genome locationLG07:40321794..40329366
RNA-Seq ExpressionTan0012696
SyntenyTan0012696
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025901.1 hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]8.9e-1953.06Show/hide
Query:  DKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDSQPI
        +KY+F HA IK +K+WF +NGYLQD+ + KN +FLN KSKLLA LAQ TT+AD Q++L    + ++SS   +S ++EDE     EYD+++PFLDSQP+
Subjt:  DKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDSQPI

KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]1.9e-2154.63Show/hide
Query:  IVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDIND
        + K L+IK W+KYNF HA IK +K+WFA+N YLQD+ ++KN EFLN KSKLL ALAQ TT+AD Q++L+   + +SSS   +S ++EDE     EYD++D
Subjt:  IVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDIND

Query:  PFLDSQPI
          LDSQP+
Subjt:  PFLDSQPI

KAA0049709.1 hypothetical protein E6C27_scaffold76G00530 [Cucumis melo var. makuwa]5.8e-1838.86Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPT-AVTQMRPFVSPTNPSSSQQGSSMPTTFVEAINTYTYYKQIVKVLQIKWWDK
        MSADQYAMDLGFT V R R+RS+SI+I    ES T PP+PS +L+RP+  V QMR   SP +PSS+++ S+ PTT+ +A+                    
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPT-AVTQMRPFVSPTNPSSSQQGSSMPTTFVEAINTYTYYKQIVKVLQIKWWDK

Query:  YNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDS
                                         + +SKLLAALAQ TT+AD Q++L+   + +SSS   +S ++EDE     EYD++DP+LDS
Subjt:  YNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDS

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]1.2e-2353.66Show/hide
Query:  PPRPSASLMRPTAV-TQMRPFVSPTNPSSSQQGSSMPTTFVEAIN--------TYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKK
        PPRPSA+L+R + +  QMRP  S    SS+++ S+  TT+ + +         +Y  YK ++K L+IKWW KYNF HA IK +K+WFADNGYLQD+ ++K
Subjt:  PPRPSASLMRPTAV-TQMRPFVSPTNPSSSQQGSSMPTTFVEAIN--------TYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKK

Query:  NAEFLNSKSKLLAALAQTTTEAD
        N EFLN KSKLLAALAQ TT+AD
Subjt:  NAEFLNSKSKLLAALAQTTTEAD

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]1.6e-2845.12Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTA-VTQMRPFVSPTNPSSSQQGSSMPTTFVEAINTYTYYKQIVKVLQIK-WWD
        MS DQYAMDLG+T V + R++S+ I IR  MES T PPRPS +L+ P   V QMR   S  +PSS+++ S++PTT+ +A+   T  KQ V  ++IK ++ 
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTA-VTQMRPFVSPTNPSSSQQGSSMPTTFVEAINTYTYYKQIVKVLQIK-WWD

Query:  KYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDSQPIGIR
        K    +  I E++  +  NG LQD+ ++KNA+FLN K K LAAL Q T +AD Q++L+   + +SSS P  S ++EDE     EYD++DPFLDSQP    
Subjt:  KYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDSQPIGIR

Query:  RIRHRIWRNPKTSIK
                NPKT  K
Subjt:  RIRHRIWRNPKTSIK

TrEMBL top hitse value%identityAlignment
A0A5A7SNT5 Uncharacterized protein4.3e-1953.06Show/hide
Query:  DKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDSQPI
        +KY+F HA IK +K+WF +NGYLQD+ + KN +FLN KSKLLA LAQ TT+AD Q++L    + ++SS   +S ++EDE     EYD+++PFLDSQP+
Subjt:  DKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDSQPI

A0A5A7SWC0 Uncharacterized protein9.3e-2254.63Show/hide
Query:  IVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDIND
        + K L+IK W+KYNF HA IK +K+WFA+N YLQD+ ++KN EFLN KSKLL ALAQ TT+AD Q++L+   + +SSS   +S ++EDE     EYD++D
Subjt:  IVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDIND

Query:  PFLDSQPI
          LDSQP+
Subjt:  PFLDSQPI

A0A5A7U8A0 Uncharacterized protein2.8e-1838.86Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPT-AVTQMRPFVSPTNPSSSQQGSSMPTTFVEAINTYTYYKQIVKVLQIKWWDK
        MSADQYAMDLGFT V R R+RS+SI+I    ES T PP+PS +L+RP+  V QMR   SP +PSS+++ S+ PTT+ +A+                    
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPT-AVTQMRPFVSPTNPSSSQQGSSMPTTFVEAINTYTYYKQIVKVLQIKWWDK

Query:  YNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDS
                                         + +SKLLAALAQ TT+AD Q++L+   + +SSS   +S ++EDE     EYD++DP+LDS
Subjt:  YNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDS

A0A5A7UZX0 Polyprotein5.8e-2453.66Show/hide
Query:  PPRPSASLMRPTAV-TQMRPFVSPTNPSSSQQGSSMPTTFVEAIN--------TYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKK
        PPRPSA+L+R + +  QMRP  S    SS+++ S+  TT+ + +         +Y  YK ++K L+IKWW KYNF HA IK +K+WFADNGYLQD+ ++K
Subjt:  PPRPSASLMRPTAV-TQMRPFVSPTNPSSSQQGSSMPTTFVEAIN--------TYTYYKQIVKVLQIKWWDKYNFSHAGIKEVKQWFADNGYLQDLSKKK

Query:  NAEFLNSKSKLLAALAQTTTEAD
        N EFLN KSKLLAALAQ TT+AD
Subjt:  NAEFLNSKSKLLAALAQTTTEAD

A0A5D3BI61 Uncharacterized protein7.8e-2945.12Show/hide
Query:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTA-VTQMRPFVSPTNPSSSQQGSSMPTTFVEAINTYTYYKQIVKVLQIK-WWD
        MS DQYAMDLG+T V + R++S+ I IR  MES T PPRPS +L+ P   V QMR   S  +PSS+++ S++PTT+ +A+   T  KQ V  ++IK ++ 
Subjt:  MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTA-VTQMRPFVSPTNPSSSQQGSSMPTTFVEAINTYTYYKQIVKVLQIK-WWD

Query:  KYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDSQPIGIR
        K    +  I E++  +  NG LQD+ ++KNA+FLN K K LAAL Q T +AD Q++L+   + +SSS P  S ++EDE     EYD++DPFLDSQP    
Subjt:  KYNFSHAGIKEVKQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDE-----EYDINDPFLDSQPIGIR

Query:  RIRHRIWRNPKTSIK
                NPKT  K
Subjt:  RIRHRIWRNPKTSIK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAAGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTGCCGTTACACAAATGAGACCTTTCGTCTCACCTACTAATCCATCTTCGTCTCAACAGGGATCTTCAATGCCTACAA
CTTTTGTTGAAGCCATCAATACTTACACCTATTACAAACAAATCGTAAAAGTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTCTCACGCAGGAATCAAAGAAGTG
AAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAAAAGAAAAATGCAGAGTTCCTCAATTCCAAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAAC
AGAGGCAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCTTCATCTTCTCCACAAAACTCTGAAGTAGAAGAAGATGAAGAATATGATATCAATGATCCGT
TTTTAGATTCCCAACCAATTGGAATCCGACGCATCCGACATAGGATATGGAGGAATCCTAAAACATCTATAAAAGACTTCAATCTTGTAATCAAAGGGCATCGGAAAATT
TTCGAGCTTTCTTCTAAATTAAACAACCTTCATATTTCAAAAACAACTCACACAATAAACGTTATAAAGTATTCCATTATTGACCAAATTATCCAAAAGACTAAGGATCT
TTCTCTAAATGAAGAAAGAATCGAGTCTCCAAATAAAGTCTTAAAAATTGAAGATACAGAAAACATCAAGAAAGACAAAATTATGGTCCATAAAGATCATTCCAAAGAAA
GAATTATAGAAAGCCCTATAATTCTTATACTAAAAAATGACCCACTTATAAAAGTGGACATTCAAGAGAAAAGATTCAATGCTATAAATGTCGATCACATGGACACTATG
CAAATAAGTGTCCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCCGATCAATACGCAATGGATCTGGGTTTCACTCAAGTGAATCGCCCAAGAACCAGAAGCGCATCGATTCAAATAAGAGATTCAATGGAGTCATTAACTCCACC
ACCGAGGCCATCAGCCTCCCTCATGCGGCCTACTGCCGTTACACAAATGAGACCTTTCGTCTCACCTACTAATCCATCTTCGTCTCAACAGGGATCTTCAATGCCTACAA
CTTTTGTTGAAGCCATCAATACTTACACCTATTACAAACAAATCGTAAAAGTTTTACAAATCAAATGGTGGGACAAGTACAACTTTTCTCACGCAGGAATCAAAGAAGTG
AAGCAATGGTTTGCCGATAATGGCTACCTCCAAGACCTGTCAAAAAAGAAAAATGCAGAGTTCCTCAATTCCAAATCAAAGCTGCTAGCTGCCTTAGCACAAACAACAAC
AGAGGCAGATTTACAAAAAATTTTGAATCAAGTTACTTCAATAGCATCTTCATCTTCTCCACAAAACTCTGAAGTAGAAGAAGATGAAGAATATGATATCAATGATCCGT
TTTTAGATTCCCAACCAATTGGAATCCGACGCATCCGACATAGGATATGGAGGAATCCTAAAACATCTATAAAAGACTTCAATCTTGTAATCAAAGGGCATCGGAAAATT
TTCGAGCTTTCTTCTAAATTAAACAACCTTCATATTTCAAAAACAACTCACACAATAAACGTTATAAAGTATTCCATTATTGACCAAATTATCCAAAAGACTAAGGATCT
TTCTCTAAATGAAGAAAGAATCGAGTCTCCAAATAAAGTCTTAAAAATTGAAGATACAGAAAACATCAAGAAAGACAAAATTATGGTCCATAAAGATCATTCCAAAGAAA
GAATTATAGAAAGCCCTATAATTCTTATACTAAAAAATGACCCACTTATAAAAGTGGACATTCAAGAGAAAAGATTCAATGCTATAAATGTCGATCACATGGACACTATG
CAAATAAGTGTCCTATGA
Protein sequenceShow/hide protein sequence
MSADQYAMDLGFTQVNRPRTRSASIQIRDSMESLTPPPRPSASLMRPTAVTQMRPFVSPTNPSSSQQGSSMPTTFVEAINTYTYYKQIVKVLQIKWWDKYNFSHAGIKEV
KQWFADNGYLQDLSKKKNAEFLNSKSKLLAALAQTTTEADLQKILNQVTSIASSSSPQNSEVEEDEEYDINDPFLDSQPIGIRRIRHRIWRNPKTSIKDFNLVIKGHRKI
FELSSKLNNLHISKTTHTINVIKYSIIDQIIQKTKDLSLNEERIESPNKVLKIEDTENIKKDKIMVHKDHSKERIIESPIILILKNDPLIKVDIQEKRFNAINVDHMDTM
QISVL