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Tan0012727 (gene) of Snake gourd v1 genome

Gene IDTan0012727
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionclassical arabinogalactan protein 4
Genome locationLG02:28222788..28223291
RNA-Seq ExpressionTan0012727
SyntenyTan0012727
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GIM05710.1 hypothetical protein Vretimale_10150 [Volvox reticuliferus]2.1e-0550Show/hide
Query:  PAPSPTPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPAAPHHAPTAHPVPPPPQSPSQSPLPPS
        P+P P PP SP PP    P   PPPPP P PP   P  PPS  P P P+  P S PPPPP +P PP+ PP SP  P   P + P PPPP  P  SP PPS
Subjt:  PAPSPTPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPAAPHHAPTAHPVPPPPQSPSQSPLPPS

Query:  PSPSWIAAPPSEAPAP
        P P    +PP  +P P
Subjt:  PSPSWIAAPPSEAPAP

XP_011659717.1 vegetative cell wall protein gp1 [Cucumis sativus]3.4e-1954.12Show/hide
Query:  MPHSALLNALLAAALILSAAAL--SPAPSPTPPASPSPPWRWTPITKPP-PPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPA
        MPHS LLNALLAAAL+ SAAA+  SP+PSPTPPAS SPPWRW PITKPP  PPTPS  +T+P++PP S         P S PPP                
Subjt:  MPHSALLNALLAAALILSAAAL--SPAPSPTPPASPSPPWRWTPITKPP-PPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPA

Query:  APHHAPTAHPVPPPPQSPSQSPLPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL
               AH   PP   P      PSPSP+WIA PPSEA +PSK KS+ F N FS+VGSV IGAM  A L
Subjt:  APHHAPTAHPVPPPPQSPSQSPLPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL

XP_022141995.1 extensin-like [Momordica charantia]1.4e-1756.33Show/hide
Query:  LAAALILSAAAL-SPAPSPTPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPAAPHHAPTAHPVP
        +AAAL+ SAAA   PAPSP+P A+PSPPWRWTP  KPP PPT S P   P   P SSPAP+P+   A  PP PP+    P SPP    +P     A PV 
Subjt:  LAAALILSAAAL-SPAPSPTPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPAAPHHAPTAHPVP

Query:  PPPQSPSQSPLPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL
        PPP          +P+PSWIA PP++A APSKHKSNA  NRFSLVGSV IGAM  A L
Subjt:  PPPQSPSQSPLPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL

XP_032465476.1 basic proline-rich protein-like, partial [Phocoena sinus]4.3e-0652.54Show/hide
Query:  SPAPSPTPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPAAPHHAPTAHPVPPPPQSPSQSPLPP
        SP P P+PP+ PSPP   +P   P PPP PSPP   P SPPS  P P+P+ +P   PP PP +P PP SPPS P+ P   P + P PPPP SPS SP PP
Subjt:  SPAPSPTPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPAAPHHAPTAHPVPPPPQSPSQSPLPP

Query:  SPSPSWIAAPPSEAPAPS
         P P   + PPS +P PS
Subjt:  SPSPSWIAAPPSEAPAPS

XP_038887113.1 anther-specific proline-rich protein APG-like [Benincasa hispida]1.9e-2564.16Show/hide
Query:  MPHSALLNALLAAALILSAAAL-SPAPSP----TPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSS
        MPHSALLNALLAAAL+ SAAA  +PAPSP    TPPASPSPPWRWTPITKPPP  TPS  ++KPT PPSS             PPP PS    P  PP  
Subjt:  MPHSALLNALLAAALILSAAAL-SPAPSP----TPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSS

Query:  PAAPHHAPTAHPVPPPPQ-SPSQSPLPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL
            HHAPT  PV  P Q SPS S   PSPSPSWIA PP EAPAPSK KS+AFNNRFS+V SV I AM  ALL
Subjt:  PAAPHHAPTAHPVPPPPQ-SPSQSPLPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL

TrEMBL top hitse value%identityAlignment
A0A0A0K238 Uncharacterized protein1.6e-1954.12Show/hide
Query:  MPHSALLNALLAAALILSAAAL--SPAPSPTPPASPSPPWRWTPITKPP-PPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPA
        MPHS LLNALLAAAL+ SAAA+  SP+PSPTPPAS SPPWRW PITKPP  PPTPS  +T+P++PP S         P S PPP                
Subjt:  MPHSALLNALLAAALILSAAAL--SPAPSPTPPASPSPPWRWTPITKPP-PPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPA

Query:  APHHAPTAHPVPPPPQSPSQSPLPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL
               AH   PP   P      PSPSP+WIA PPSEA +PSK KS+ F N FS+VGSV IGAM  A L
Subjt:  APHHAPTAHPVPPPPQSPSQSPLPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL

A0A1S3CHW9 classical arabinogalactan protein 41.1e-0442.93Show/hide
Query:  MPHSALLNALLAAALILSAAALSPAPSPTPPASPSPPWRWTPITKPP-PPPTPSPPQ--TKPTSPPSSSPAPAP--ASAPASFPP--PPPSTP--VPPAS
        M  S LLN L  A L++SAAA SPAPSP P A  SP W+WTP  +PP  PPT  PP   T P SP  S PA  P  +  P+S+ P  PP + P  + P +
Subjt:  MPHSALLNALLAAALILSAAALSPAPSPTPPASPSPPWRWTPITKPP-PPPTPSPPQ--TKPTSPPSSSPAPAP--ASAPASFPP--PPPSTP--VPPAS

Query:  PPSSPAAPHHAP----TAHPVPPPPQ---SPSQSP--------LPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL
        PP +  +P HAP    T  P P P +   +P+++P         PPSP+       PSEAPAPSK  + A  NRF++ GS+  G M+ A +
Subjt:  PPSSPAAPHHAP----TAHPVPPPPQ---SPSQSP--------LPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL

A0A5A7V3Q7 Classical arabinogalactan protein 41.1e-0442.93Show/hide
Query:  MPHSALLNALLAAALILSAAALSPAPSPTPPASPSPPWRWTPITKPP-PPPTPSPPQ--TKPTSPPSSSPAPAP--ASAPASFPP--PPPSTP--VPPAS
        M  S LLN L  A L++SAAA SPAPSP P A  SP W+WTP  +PP  PPT  PP   T P SP  S PA  P  +  P+S+ P  PP + P  + P +
Subjt:  MPHSALLNALLAAALILSAAALSPAPSPTPPASPSPPWRWTPITKPP-PPPTPSPPQ--TKPTSPPSSSPAPAP--ASAPASFPP--PPPSTP--VPPAS

Query:  PPSSPAAPHHAP----TAHPVPPPPQ---SPSQSP--------LPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL
        PP +  +P HAP    T  P P P +   +P+++P         PPSP+       PSEAPAPSK  + A  NRF++ GS+  G M+ A +
Subjt:  PPSSPAAPHHAP----TAHPVPPPPQ---SPSQSP--------LPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL

A0A6J1CJN4 extensin-like6.9e-1856.33Show/hide
Query:  LAAALILSAAAL-SPAPSPTPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPAAPHHAPTAHPVP
        +AAAL+ SAAA   PAPSP+P A+PSPPWRWTP  KPP PPT S P   P   P SSPAP+P+   A  PP PP+    P SPP    +P     A PV 
Subjt:  LAAALILSAAAL-SPAPSPTPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPAAPHHAPTAHPVP

Query:  PPPQSPSQSPLPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL
        PPP          +P+PSWIA PP++A APSKHKSNA  NRFSLVGSV IGAM  A L
Subjt:  PPPQSPSQSPLPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL

A0A6J3RCJ2 basic proline-rich protein-like3.3e-0447.73Show/hide
Query:  PAPSPTPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPAAPHHAPTAHPVPPPPQS---------
        P P P PP+ P PP    P    PP P PSPP + P  PPS  P P P S+P S PPPPPS P PP+SPPS P      P + P PPPP S         
Subjt:  PAPSPTPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPAAPHHAPTAHPVPPPPQS---------

Query:  --PSQSPLPPSPSPSWIAAPPSEAPAPSKHKS
          PS SP P SPSP   + PPS  P PS   S
Subjt:  --PSQSPLPPSPSPSWIAAPPSEAPAPSKHKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCACTCAGCCCTTCTCAACGCCCTGTTGGCGGCGGCGCTGATCCTCTCCGCCGCCGCTCTCTCCCCGGCACCGTCGCCAACTCCGCCGGCCTCCCCTTCCCCGCC
CTGGAGATGGACCCCCATCACAAAGCCTCCTCCTCCCCCAACGCCGTCTCCACCTCAGACCAAGCCCACTTCTCCACCGTCCTCATCTCCAGCACCGGCACCGGCATCGG
CACCAGCATCATTTCCGCCGCCGCCGCCGTCCACTCCTGTTCCACCGGCATCGCCTCCGAGCTCTCCGGCGGCGCCACACCATGCACCAACTGCACATCCAGTTCCCCCG
CCGCCGCAGAGCCCTTCTCAGTCCCCCCTGCCACCGTCTCCGTCTCCGTCGTGGATTGCCGCTCCTCCGTCGGAGGCACCGGCGCCGTCGAAACATAAGAGCAACGCCTT
TAATAACAGATTCTCGTTGGTTGGATCGGTGACTATTGGAGCCATGGTTGTTGCTCTGCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTCACTCAGCCCTTCTCAACGCCCTGTTGGCGGCGGCGCTGATCCTCTCCGCCGCCGCTCTCTCCCCGGCACCGTCGCCAACTCCGCCGGCCTCCCCTTCCCCGCC
CTGGAGATGGACCCCCATCACAAAGCCTCCTCCTCCCCCAACGCCGTCTCCACCTCAGACCAAGCCCACTTCTCCACCGTCCTCATCTCCAGCACCGGCACCGGCATCGG
CACCAGCATCATTTCCGCCGCCGCCGCCGTCCACTCCTGTTCCACCGGCATCGCCTCCGAGCTCTCCGGCGGCGCCACACCATGCACCAACTGCACATCCAGTTCCCCCG
CCGCCGCAGAGCCCTTCTCAGTCCCCCCTGCCACCGTCTCCGTCTCCGTCGTGGATTGCCGCTCCTCCGTCGGAGGCACCGGCGCCGTCGAAACATAAGAGCAACGCCTT
TAATAACAGATTCTCGTTGGTTGGATCGGTGACTATTGGAGCCATGGTTGTTGCTCTGCTTTAG
Protein sequenceShow/hide protein sequence
MPHSALLNALLAAALILSAAALSPAPSPTPPASPSPPWRWTPITKPPPPPTPSPPQTKPTSPPSSSPAPAPASAPASFPPPPPSTPVPPASPPSSPAAPHHAPTAHPVPP
PPQSPSQSPLPPSPSPSWIAAPPSEAPAPSKHKSNAFNNRFSLVGSVTIGAMVVALL