CuGenDBv2

Gene ID	Tan0012769
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Genome location	LG02:64848715..64849284
RNA-Seq Expression	Tan0012769
Synteny	Tan0012769
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-67

67.72

Show/hide

Query:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE
        M+ + + +L +D+L G N+ +WK+ +NT+L++D+LRFVL EECPQ+PA NA ++V+E Y+ W KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQE
Subjt:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE

Query:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL
        MFGQ S QI+H++LKY+YN+RM E +S+REHVL++MVHFNVAEMNGAVIDE S VSFILESLP+SFLQFR+NAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-67

67.72

Show/hide

Query:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE
        M+ + + +L +D+L G N+ +WK+ +NT+L++D+LRFVL EECPQ+PA NA ++V+E Y+ W KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQE
Subjt:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE

Query:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL
        MFGQ S QI+H++LKY+YN+RM E +S+REHVL++MVHFNVAEMNGAVIDE S VSFILESLP+SFLQFR+NAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-67

67.72

Show/hide

Query:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE
        M+ + + +L +D+L G N+ +WK+ +NT+L++D+LRFVL EECPQ+PA NA ++V+E Y+ W KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQE
Subjt:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE

Query:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL
        MFGQ S QI+H++LKY+YN+RM E +S+REHVL++MVHFNVAEMNGAVIDE S VSFILESLP+SFLQFR+NAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-67

68.25

Show/hide

Query:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE
        M+ + + +L +D+L G N+  WK+ +NT+L++D+LRFVL EECPQ+PA NA Q+V+E Y+ W KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQE
Subjt:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE

Query:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL
        MFGQ S QI+H++LKY+YN+RM E +S+REHVL++MVHFNVAEMNGAVIDE S VSFILESLP+SFLQFR+NAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

2.9e-67

67.72

Show/hide

Query:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE
        M+ + + +L +D+L G N+ +WK+ +NT+L++D+LRFVL EECPQ+PA NA ++V+E Y+ W KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQE
Subjt:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE

Query:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL
        MFGQ S QI+H++LKY+YN+RM E +S+REHVL++MVHFNVAEMNGAVIDE S VSFILESLP+SFLQFR+NAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.4e-67

67.72

Show/hide

Query:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE
        M+ + + +L +D+L G N+ +WK+ +NT+L++D+LRFVL EECPQ+PA NA ++V+E Y+ W KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQE
Subjt:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE

Query:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL
        MFGQ S QI+H++LKY+YN+RM E +S+REHVL++MVHFNVAEMNGAVIDE S VSFILESLP+SFLQFR+NAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL

A0A5A7TU93 Gag/pol protein

1.4e-67

67.72

Show/hide

Query:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE
        M+ + + +L +D+L G N+ +WK+ +NT+L++D+LRFVL EECPQ+PA NA ++V+E Y+ W KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQE
Subjt:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE

Query:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL
        MFGQ S QI+H++LKY+YN+RM E +S+REHVL++MVHFNVAEMNGAVIDE S VSFILESLP+SFLQFR+NAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL

A0A5A7TWB9 Gag/pol protein

1.4e-67

67.72

Show/hide

Query:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE
        M+ + + +L +D+L G N+ +WK+ +NT+L++D+LRFVL EECPQ+PA NA ++V+E Y+ W KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQE
Subjt:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE

Query:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL
        MFGQ S QI+H++LKY+YN+RM E +S+REHVL++MVHFNVAEMNGAVIDE S VSFILESLP+SFLQFR+NAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL

A0A5A7V6N0 Gag/pol protein

6.3e-68

68.25

Show/hide

Query:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE
        M+ + + +L +D+L G N+  WK+ +NT+L++D+LRFVL EECPQ+PA NA Q+V+E Y+ W KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQE
Subjt:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE

Query:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL
        MFGQ S QI+H++LKY+YN+RM E +S+REHVL++MVHFNVAEMNGAVIDE S VSFILESLP+SFLQFR+NAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL

A0A5D3CPJ6 Gag/pol protein

1.4e-67

67.72

Show/hide

Query:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE
        M+ + + +L +D+L G N+ +WK+ +NT+L++D+LRFVL EECPQ+PA NA ++V+E Y+ W KAN+KA+ YILAS+SEVLAKK+E M++AREIM SLQE
Subjt:  MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQE

Query:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL
        MFGQ S QI+H++LKY+YN+RM E +S+REHVL++MVHFNVAEMNGAVIDE S VSFILESLP+SFLQFR+NAVMNKI Y LTTLLNEL
Subjt:  MFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G00980.1 zinc knuckle (CCHC-type) family protein

2.0e-05

21.64

Show/hide

Query:  ALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQS-------VKEAYDHWIKANDKAKVYILASVSEVLAKK-NEGMVSAREIMSSL
        +++K  R  G+++  W S +   L    L +VLSE CP I +   P++              W++ +     +++ S+S+ L ++ ++    A+E+   L
Subjt:  ALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQS-------VKEAYDHWIKANDKAKVYILASVSEVLAKK-NEGMVSAREIMSSL

Query:  QEMFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQF
        + ++     + +   ++     RM E   + E V       +     G  +DE  HVS I+   P S+  F
Subjt:  QEMFGQPSRQIRHESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQF

Sequences

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CDS sequence

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ATGTCGTTCTCAATAATAGCCTTACTTAAAAGCGACCGTTTAACTGGTGAGAATTTTACTACGTGGAAGTCCAACTTGAATACGATTCTCGTTGTTGACAACCTACGGTT
TGTATTGTCTGAGGAATGTCCTCAGATCCCTGCTCGTAACGCTCCTCAATCTGTTAAGGAGGCGTACGACCACTGGATCAAGGCCAATGATAAGGCCAAGGTCTACATTT
TGGCTAGTGTTTCTGAAGTTCTGGCCAAAAAGAACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCGCTGCAGGAAATGTTTGGACAACCGTCTAGACAGATTCGG
CACGAATCCCTCAAATATGTTTATAACTCCCGTATGAAGGAGAGGTCATCGATGAGAGAACACGTTCTTGATCTAATGGTCCACTTCAACGTGGCTGAGATGAACGGAGC
GGTCATTGACGAGCAAAGTCATGTATCGTTCATCCTGGAATCTCTTCCGAAGAGTTTCCTGCAATTCCGCAACAATGCGGTGATGAACAAGATAGAGTATAACCTGACTA
CTCTCCTTAATGAACTCTGA

mRNA sequence

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Protein sequence

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MSFSIIALLKSDRLTGENFTTWKSNLNTILVVDNLRFVLSEECPQIPARNAPQSVKEAYDHWIKANDKAKVYILASVSEVLAKKNEGMVSAREIMSSLQEMFGQPSRQIR
HESLKYVYNSRMKERSSMREHVLDLMVHFNVAEMNGAVIDEQSHVSFILESLPKSFLQFRNNAVMNKIEYNLTTLLNEL

Tan0012769 (gene) of Snake gourd v1 genome