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Tan0012810 (gene) of Snake gourd v1 genome

Gene IDTan0012810
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG09:5158521..5172894
RNA-Seq ExpressionTan0012810
SyntenyTan0012810
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.6e-1352.29Show/hide
Query:  MTETLSPRLYGTVCTQVEIELPVPDNLPYSAGSSKSLILCTWVEMYRN---------FQCFMLSFLTHVYEYSF--NGIVREVNDNCWLHAVCRAKLAGS
        MTE LS RLYGTVCTQV+IELP+PD LP SA SS+S    TW+E+Y           F   ++S L  V+  S    GIVR  +D CWLHAV R K A  
Subjt:  MTETLSPRLYGTVCTQVEIELPVPDNLPYSAGSSKSLILCTWVEMYRN---------FQCFMLSFLTHVYEYSF--NGIVREVNDNCWLHAVCRAKLAGS

Query:  SGGGVTTWY
         G  VTTWY
Subjt:  SGGGVTTWY

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-1553.15Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR
        MTE LSPRLYGTVCTQ                 VEIELPVPD LP SA SS+S    TW+E+Y  F         HV  +   GIVRE +D CWLHAV R
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR

Query:  AKLAGSSGGGV
        AK AG  GGGV
Subjt:  AKLAGSSGGGV

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]4.9e-1045.22Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLS-FLTHVYEYSFNGIVREVNDNCWLHAVC
        MTE LS +LY TVCT                  VEIELPVPD LP SA S     +  W  +      FML  F+         GI+R  +D CWLHAV 
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLS-FLTHVYEYSFNGIVREVNDNCWLHAVC

Query:  RAKLAGSSGGGVTTW
        RAK+AGS  GGVTTW
Subjt:  RAKLAGSSGGGVTTW

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]4.9e-1044.35Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR
        MTE LS RLYGTVCTQ                 VEIELPV D LP SA SS+S                              GIVR  +D CWLH+V R
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR

Query:  AKLAGSSGGGVTTWY
        AK A   GGGVTTWY
Subjt:  AKLAGSSGGGVTTWY

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-1553.15Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR
        MTE LSPRLYGTVCTQ                 VEIELPVPD LP SA SS+S    TW+E+Y  F         HV  +   GIVRE +D CWLHAV R
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR

Query:  AKLAGSSGGGV
        AK AG  GGGV
Subjt:  AKLAGSSGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein7.9e-1452.29Show/hide
Query:  MTETLSPRLYGTVCTQVEIELPVPDNLPYSAGSSKSLILCTWVEMYRN---------FQCFMLSFLTHVYEYSF--NGIVREVNDNCWLHAVCRAKLAGS
        MTE LS RLYGTVCTQV+IELP+PD LP SA SS+S    TW+E+Y           F   ++S L  V+  S    GIVR  +D CWLHAV R K A  
Subjt:  MTETLSPRLYGTVCTQVEIELPVPDNLPYSAGSSKSLILCTWVEMYRN---------FQCFMLSFLTHVYEYSF--NGIVREVNDNCWLHAVCRAKLAGS

Query:  SGGGVTTWY
         G  VTTWY
Subjt:  SGGGVTTWY

A0A5A7VMG9 Reverse transcriptase8.4e-1653.15Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR
        MTE LSPRLYGTVCTQ                 VEIELPVPD LP SA SS+S    TW+E+Y  F         HV  +   GIVRE +D CWLHAV R
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR

Query:  AKLAGSSGGGV
        AK AG  GGGV
Subjt:  AKLAGSSGGGV

A0A5D3C0X3 Retrotrans_gag domain-containing protein2.4e-1045.22Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLS-FLTHVYEYSFNGIVREVNDNCWLHAVC
        MTE LS +LY TVCT                  VEIELPVPD LP SA S     +  W  +      FML  F+         GI+R  +D CWLHAV 
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLS-FLTHVYEYSFNGIVREVNDNCWLHAVC

Query:  RAKLAGSSGGGVTTW
        RAK+AGS  GGVTTW
Subjt:  RAKLAGSSGGGVTTW

A0A5D3CU23 Retrotrans_gag domain-containing protein2.4e-1044.35Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR
        MTE LS RLYGTVCTQ                 VEIELPV D LP SA SS+S                              GIVR  +D CWLH+V R
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR

Query:  AKLAGSSGGGVTTWY
        AK A   GGGVTTWY
Subjt:  AKLAGSSGGGVTTWY

A0A5D3DX39 Reverse transcriptase8.4e-1653.15Show/hide
Query:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR
        MTE LSPRLYGTVCTQ                 VEIELPVPD LP SA SS+S    TW+E+Y  F         HV  +   GIVRE +D CWLHAV R
Subjt:  MTETLSPRLYGTVCTQ-----------------VEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCR

Query:  AKLAGSSGGGV
        AK AG  GGGV
Subjt:  AKLAGSSGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACTGTGTGCACACAGGTAGAGATCGAGCTCCCAGTGCCTGATAACCTGCCATATTCTGCTGGAAGCTCCAAGAGTTT
GATACTTTGTACGTGGGTGGAGATGTATAGGAATTTTCAATGCTTTATGCTTTCTTTTTTAACACATGTTTATGAGTATTCATTCAACGGTATCGTTAGAGAGGTGAACG
ATAACTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAACTTGGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACTGTGTGCACACAGGTAGAGATCGAGCTCCCAGTGCCTGATAACCTGCCATATTCTGCTGGAAGCTCCAAGAGTTT
GATACTTTGTACGTGGGTGGAGATGTATAGGAATTTTCAATGCTTTATGCTTTCTTTTTTAACACATGTTTATGAGTATTCATTCAACGGTATCGTTAGAGAGGTGAACG
ATAACTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGGTAGTTCGGGAGGGGGTGTGACAACTTGGTATTAG
Protein sequenceShow/hide protein sequence
MTETLSPRLYGTVCTQVEIELPVPDNLPYSAGSSKSLILCTWVEMYRNFQCFMLSFLTHVYEYSFNGIVREVNDNCWLHAVCRAKLAGSSGGGVTTWY