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Tan0012823 (gene) of Snake gourd v1 genome

Gene IDTan0012823
OrganismTrichosanthes anguina (Snake gourd v1)
Description40S ribosomal protein S23-1
Genome locationLG06:4298406..4299582
RNA-Seq ExpressionTan0012823
SyntenyTan0012823
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022156333.1 uncharacterized protein LOC111023254 [Momordica charantia]5.0e-3985.86Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR
        M LRR LGFS GE+MRSDA PC QLMKQTAGLCTV GGLAF ILCRLHYGPRITVPRSLRWAACGA SMSATS LLVRLFSPECE QNI AYDKRK++R
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR

XP_022937466.1 uncharacterized protein LOC111443868 [Cucurbita moschata]3.9e-3987.88Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR
        M LRRF GFS GELMRSDAKPCSQLMKQTAGLCTV GGLAF ILCRLHYGPRITVPRSLRWAACGAASMSATS LLVRLFSPECE QNI AYDK +  R
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR

XP_022969628.1 uncharacterized protein LOC111468599 [Cucurbita maxima]1.3e-3988.89Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR
        M LRRF GFS GELMRSDAKPCSQLMKQTAGLCTV GGLAF ILCRLHYGPRITVPRSLRWAACGAASMSATS LLVRLFSPECE QNI AYDK K  R
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR

XP_023538321.1 uncharacterized protein LOC111799138 [Cucurbita pepo subsp. pepo]3.0e-3987.88Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR
        M LRRF GFS G+LMRSDAKPCSQLMKQTAGLCTV GGLAF ILCRLHYGPRITVPRSLRWAACGAASMSATS LLVRLFSPECE QNI AYDK K  R
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR

XP_038889141.1 uncharacterized protein LOC120079031 [Benincasa hispida]4.1e-4188.89Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR
        M LRRFLGFS GE+MRSDAKPCSQLMKQTAGLCTV GGLAF ILCRLHYGPRITVPRSLRWAACGAASMSATS LLVRLFSPECE QNI AYDKRK+++
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR

TrEMBL top hitse value%identityAlignment
A0A1S3BWM4 uncharacterized protein LOC1034939373.0e-3783.51Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKI
        M LRR LGFS GE+MRSDAKPCSQLMKQTAGLC+V G L F +LCRLHYGPRITVPRSLRWAACGAASMSATS LLVRLFSPECE QNI AYD+ K+
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKI

A0A5D3BBN9 40S ribosomal protein S23-13.0e-3783.51Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKI
        M LRR LGFS GE+MRSDAKPCSQLMKQTAGLC+V G L F +LCRLHYGPRITVPRSLRWAACGAASMSATS LLVRLFSPECE QNI AYD+ K+
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKI

A0A6J1DQC3 uncharacterized protein LOC1110232542.4e-3985.86Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR
        M LRR LGFS GE+MRSDA PC QLMKQTAGLCTV GGLAF ILCRLHYGPRITVPRSLRWAACGA SMSATS LLVRLFSPECE QNI AYDKRK++R
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR

A0A6J1FAF1 uncharacterized protein LOC1114438681.9e-3987.88Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR
        M LRRF GFS GELMRSDAKPCSQLMKQTAGLCTV GGLAF ILCRLHYGPRITVPRSLRWAACGAASMSATS LLVRLFSPECE QNI AYDK +  R
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR

A0A6J1I1J3 uncharacterized protein LOC1114685996.4e-4088.89Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR
        M LRRF GFS GELMRSDAKPCSQLMKQTAGLCTV GGLAF ILCRLHYGPRITVPRSLRWAACGAASMSATS LLVRLFSPECE QNI AYDK K  R
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTV-GGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G57540.1 unknown protein1.4e-3472.92Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTVGG-LAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRK
        M LR+ LG+S G+LMRSDAKPCS+LMKQTA + TVGG L F +LCRLHYGPRITVPRSLRWA CGA S+S ++ +LVRLFSPECE QNI AYD  K
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTVGG-LAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRK

AT1G57540.2 unknown protein1.4e-3472.92Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTVGG-LAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRK
        M LR+ LG+S G+LMRSDAKPCS+LMKQTA + TVGG L F +LCRLHYGPRITVPRSLRWA CGA S+S ++ +LVRLFSPECE QNI AYD  K
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTVGG-LAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRK

AT1G57540.3 unknown protein1.4e-3472.92Show/hide
Query:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTVGG-LAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRK
        M LR+ LG+S G+LMRSDAKPCS+LMKQTA + TVGG L F +LCRLHYGPRITVPRSLRWA CGA S+S ++ +LVRLFSPECE QNI AYD  K
Subjt:  MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTVGG-LAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCTTAGACGATTCTTAGGTTTTTCATACGGTGAGCTAATGAGATCAGATGCTAAACCGTGTTCTCAGTTGATGAAACAGACGGCTGGATTATGTACTGTTGGTGG
ACTTGCATTCTGTATTCTCTGTAGATTACATTATGGTCCAAGAATTACCGTTCCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCTGCATCAATGAGTGCAACCTCGACTT
TGCTTGTTCGATTGTTTAGTCCTGAATGTGAACTCCAGAACATTGTTGCTTATGACAAAAGGAAAATTATAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCTTAGACGATTCTTAGGTTTTTCATACGGTGAGCTAATGAGATCAGATGCTAAACCGTGTTCTCAGTTGATGAAACAGACGGCTGGATTATGTACTGTTGGTGG
ACTTGCATTCTGTATTCTCTGTAGATTACATTATGGTCCAAGAATTACCGTTCCTAGGAGTCTTCGTTGGGCAGCTTGTGGAGCTGCATCAATGAGTGCAACCTCGACTT
TGCTTGTTCGATTGTTTAGTCCTGAATGTGAACTCCAGAACATTGTTGCTTATGACAAAAGGAAAATTATAAGGTAA
Protein sequenceShow/hide protein sequence
MVLRRFLGFSYGELMRSDAKPCSQLMKQTAGLCTVGGLAFCILCRLHYGPRITVPRSLRWAACGAASMSATSTLLVRLFSPECELQNIVAYDKRKIIR