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Tan0012840 (gene) of Snake gourd v1 genome

Gene IDTan0012840
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG01:49482377..49484192
RNA-Seq ExpressionTan0012840
SyntenyTan0012840
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041127.1 gag/pol protein [Cucumis melo var. makuwa]4.3e-3177.32Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV
        M+DVLAKK+ESL TAK IMDSLK +FGQP   L HEAIKYIY K+MKEGTSVREHVLDMM+HFNIAE+NGG IDE N  Q FQ LTK KGKEVE NV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV

KAA0042331.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-3170.91Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLR
        M+DVLAKK+ESL T K IMDSLK MFGQP   LRHEAIKYIY KRMKEGTS++EHVLDMM+HFNIAEVNGGAID  N  Q FQ LTK KGKEVE NV   
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLR

Query:  MPNARVGAKS
            + G+ S
Subjt:  MPNARVGAKS

KAA0046961.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-3177.32Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV
        M+DVLAKK+ESL TAK IMD LK MFG+P   LRHEAIKYIY KRMK+GTSVREHVLDMM+HFNIAEVNGGAID+ N  QHFQ LTK KG+EV+ NV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV

TYJ98401.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-3272.73Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLR
        M+DVLAKK+ESL TAK IMDSLK MFGQP   LRHE IKYIY KRMKEGTSVREHVL+MM+HFNIAEVNGGAIDE N  Q FQ LTK KGKEVE NV   
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLR

Query:  MPNARVGAKS
            + G+ S
Subjt:  MPNARVGAKS

TYK04821.1 gag/pol protein [Cucumis melo var. makuwa]1.9e-3177.32Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV
        M+DVLAKK+ESL TAK IMD LK MFG+P   LRHEAIKYIY KRMK+GTSVREHVLDMM+HFNIAEVNGGAID+ N  QHFQ LTK KG+EV+ NV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV

TrEMBL top hitse value%identityAlignment
A0A5A7THM4 Gag/pol protein2.1e-3177.32Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV
        M+DVLAKK+ESL TAK IMDSLK +FGQP   L HEAIKYIY K+MKEGTSVREHVLDMM+HFNIAE+NGG IDE N  Q FQ LTK KGKEVE NV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV

A0A5A7U032 Gag/pol protein9.4e-3277.32Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV
        M+DVLAKK+ESL TAK IMD LK MFG+P   LRHEAIKYIY KRMK+GTSVREHVLDMM+HFNIAEVNGGAID+ N  QHFQ LTK KG+EV+ NV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV

A0A5D3BI96 Gag/pol protein6.5e-3372.73Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLR
        M+DVLAKK+ESL TAK IMDSLK MFGQP   LRHE IKYIY KRMKEGTSVREHVL+MM+HFNIAEVNGGAIDE N  Q FQ LTK KGKEVE NV   
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLR

Query:  MPNARVGAKS
            + G+ S
Subjt:  MPNARVGAKS

A0A5D3BYQ4 Gag/pol protein9.4e-3277.32Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV
        M+DVLAKK+ESL TAK IMD LK MFG+P   LRHEAIKYIY KRMK+GTSVREHVLDMM+HFNIAEVNGGAID+ N  QHFQ LTK KG+EV+ NV
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNV

A0A5D3CU35 Gag/pol protein5.5e-3270.91Show/hide
Query:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLR
        M+DVLAKK+ESL T K IMDSLK MFGQP   LRHEAIKYIY KRMKEGTS++EHVLDMM+HFNIAEVNGGAID  N  Q FQ LTK KGKEVE NV   
Subjt:  MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLR

Query:  MPNARVGAKS
            + G+ S
Subjt:  MPNARVGAKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGATGTATTGGCTAAAAAATACGAATCCTTAGGCACAGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGGCAACCGTCATCGGTTCTAAGACATGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTTAATATTGCTGAAGTAAATGGTGGTGCCATCG
ACGAGGAAAATAAGCTCCAACATTTTCAAACTCTTACAAAAGCTAAGGGGAAAGAGGTGGAGGTAAATGTTGATCTGAGGATGCCTAACGCACGTGTTGGTGCAAAATCC
TAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGATGTATTGGCTAAAAAATACGAATCCTTAGGCACAGCTAAGGCTATCATGGATTCGTTAAAAGAGATGTTCGGGCAACCGTCATCGGTTCTAAGACATGAGGC
TATTAAGTACATTTACAACAAGCGTATGAAGGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGGTCCACTTTAATATTGCTGAAGTAAATGGTGGTGCCATCG
ACGAGGAAAATAAGCTCCAACATTTTCAAACTCTTACAAAAGCTAAGGGGAAAGAGGTGGAGGTAAATGTTGATCTGAGGATGCCTAACGCACGTGTTGGTGCAAAATCC
TAA
Protein sequenceShow/hide protein sequence
MTDVLAKKYESLGTAKAIMDSLKEMFGQPSSVLRHEAIKYIYNKRMKEGTSVREHVLDMMVHFNIAEVNGGAIDEENKLQHFQTLTKAKGKEVEVNVDLRMPNARVGAKS