CuGenDBv2

Gene ID	Tan0012885
Organism	Trichosanthes anguina (Snake gourd v1)
Description	mediator of RNA polymerase II transcription subunit 1 isoform X1
Genome location	LG11:20645432..20646794
RNA-Seq Expression	Tan0012885
Synteny	Tan0012885
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022141428.1 flocculation protein FLO11 isoform X1 [Momordica charantia]

2.6e-63

75.57

Show/hide

Query:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG
        PSVPHA LR PNNSNVSS+E KIASLDLK GSTLEKRPSLSQVQ +NDFFNLIKKK+  SS  +LSDSC +VKSP+IGQSNELTREEINIPASP V+ENG
Subjt:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG

Query:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS
         +ETRNGDSSEEVQASCDS EK  SHV  +SLDEEE +FL SLGW+E Y EDEGLTEEEIN+FY E+    +  P+
Subjt:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS

XP_022141429.1 uncharacterized protein LOC111011833 isoform X2 [Momordica charantia]

2.6e-63

75.57

Show/hide

Query:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG
        PSVPHA LR PNNSNVSS+E KIASLDLK GSTLEKRPSLSQVQ +NDFFNLIKKK+  SS  +LSDSC +VKSP+IGQSNELTREEINIPASP V+ENG
Subjt:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG

Query:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS
         +ETRNGDSSEEVQASCDS EK  SHV  +SLDEEE +FL SLGW+E Y EDEGLTEEEIN+FY E+    +  P+
Subjt:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS

XP_022141430.1 flocculation protein FLO11 isoform X3 [Momordica charantia]

2.6e-63

75.57

Show/hide

Query:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG
        PSVPHA LR PNNSNVSS+E KIASLDLK GSTLEKRPSLSQVQ +NDFFNLIKKK+  SS  +LSDSC +VKSP+IGQSNELTREEINIPASP V+ENG
Subjt:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG

Query:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS
         +ETRNGDSSEEVQASCDS EK  SHV  +SLDEEE +FL SLGW+E Y EDEGLTEEEIN+FY E+    +  P+
Subjt:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS

XP_022939265.1 uncharacterized protein LOC111445235 [Cucurbita moschata]

2.0e-63

72.97

Show/hide

Query:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG
        PSVPHA LR PNNSNV+S+E K+ASLDLK G+TLEKRPSLSQVQ +NDFFNLIKKK+SMSS  VLSDSC SVKSPSIGQSNELTREEI+ PASPHV+ENG
Subjt:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG

Query:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPSGRALLEKPS
         +E  NGDSSEEV++SCDS EKT++HVA +SLDEEE +FL SLGW+E   EDEGLTEEEIN+FY E +  K S   GR++  K S
Subjt:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPSGRALLEKPS

XP_023550773.1 uncharacterized protein LOC111808812 [Cucurbita pepo subsp. pepo]

5.1e-64

73.51

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Query:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG
        PSVPHA LR PNNSNV+S+E K+ASLDLK G+TLEKRPSLSQVQ +NDFFNLIKKK+SMSS  VLSDSC SVKSPSIGQSNELTREEI+IPASPHV+ENG
Subjt:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG

Query:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPSGRALLEKPS
         +E  NGDSSEEV++SCDS EKT++HVA +SLDEEE +FL SLGW+E   EDEGLTEEEIN+FY E +  K S   GR++  K S
Subjt:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPSGRALLEKPS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CI28 flocculation protein FLO11 isoform X3

1.2e-63

75.57

Show/hide

Query:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG
        PSVPHA LR PNNSNVSS+E KIASLDLK GSTLEKRPSLSQVQ +NDFFNLIKKK+  SS  +LSDSC +VKSP+IGQSNELTREEINIPASP V+ENG
Subjt:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG

Query:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS
         +ETRNGDSSEEVQASCDS EK  SHV  +SLDEEE +FL SLGW+E Y EDEGLTEEEIN+FY E+    +  P+
Subjt:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS

A0A6J1CIL7 uncharacterized protein LOC111011833 isoform X2

1.2e-63

75.57

Show/hide

Query:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG
        PSVPHA LR PNNSNVSS+E KIASLDLK GSTLEKRPSLSQVQ +NDFFNLIKKK+  SS  +LSDSC +VKSP+IGQSNELTREEINIPASP V+ENG
Subjt:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG

Query:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS
         +ETRNGDSSEEVQASCDS EK  SHV  +SLDEEE +FL SLGW+E Y EDEGLTEEEIN+FY E+    +  P+
Subjt:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS

A0A6J1CKG8 flocculation protein FLO11 isoform X1

1.2e-63

75.57

Show/hide

Query:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG
        PSVPHA LR PNNSNVSS+E KIASLDLK GSTLEKRPSLSQVQ +NDFFNLIKKK+  SS  +LSDSC +VKSP+IGQSNELTREEINIPASP V+ENG
Subjt:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG

Query:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS
         +ETRNGDSSEEVQASCDS EK  SHV  +SLDEEE +FL SLGW+E Y EDEGLTEEEIN+FY E+    +  P+
Subjt:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPS

A0A6J1FM76 uncharacterized protein LOC111445235

9.5e-64

72.97

Show/hide

Query:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG
        PSVPHA LR PNNSNV+S+E K+ASLDLK G+TLEKRPSLSQVQ +NDFFNLIKKK+SMSS  VLSDSC SVKSPSIGQSNELTREEI+ PASPHV+ENG
Subjt:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG

Query:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPSGRALLEKPS
         +E  NGDSSEEV++SCDS EKT++HVA +SLDEEE +FL SLGW+E   EDEGLTEEEIN+FY E +  K S   GR++  K S
Subjt:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPSGRALLEKPS

A0A6J1JV88 uncharacterized protein LOC111489184

1.8e-62

72.43

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Query:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG
        PSVPHA LR PNNSNV+S+E K+A LDLK G+TLEKRPSLSQVQ +NDFFNLIKKK+SMSS  VLSDS  SVKSPSIGQSNELTREEI+IPASPHV+ENG
Subjt:  PSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENG

Query:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPSGRALLEKPS
         +E  NGDSSEEV++SCDS EKT++HVA +SLDEEE +FL SLGW+E   EDEGLTEEEIN+FY E +  K S   GR++  K S
Subjt:  TMETRNGDSSEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPSGRALLEKPS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G36990.1 unknown protein

2.5e-08

33.76

Show/hide

Query:  PNNSNVSSMECKIAS-LDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENGTMETRNGDS
        P  S  S  E K AS   +  G T+EK+PS +Q Q ++ F++ +K+K + S+ +  +D   S  S S     +L   +  I + P         +    S
Subjt:  PNNSNVSSMECKIAS-LDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENGTMETRNGDS

Query:  SEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHE
          EV  S   +  T    AT + DEEE  FL SLGW E   E E LTEEEI++F  +
Subjt:  SEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHE

AT4G08510.1 unknown protein

8.3e-04

28.57

Show/hide

Query:  ASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKK--SSMSSYVVLSDSCI-SVKSPSIGQSNELTREEINIPASPHVIENGTMETRNGDSSEEVQASCDSS
        AS+++  G   EK+ SL+Q Q ++ F++ +K+K  +++S+    + SCI S        S EL   +   P+SP   E         +  E V+   + +
Subjt:  ASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKK--SSMSSYVVLSDSCI-SVKSPSIGQSNELTREEINIPASPHVIENGTMETRNGDSSEEVQASCDSS

Query:  EKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEI
        E+     +    D +E +FL SLGW+E  S++   T EE+
Subjt:  EKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCCTTCAGTTCCACATGCTTCTTTGAGAATCCCGAACAATTCAAATGTTTCGTCTATGGAGTGCAAGATTGCTAGCTTAGATCTCAAATTTGGATCAACTTTGGAGAA
AAGACCTTCCTTATCACAAGTCCAGATTCAGAATGATTTCTTTAACCTCATTAAGAAGAAAAGTTCAATGAGTTCTTATGTTGTTCTCTCAGATTCATGCATTTCTGTGA
AATCTCCTTCAATTGGCCAATCTAATGAACTAACAAGGGAAGAAATCAACATTCCTGCAAGTCCTCATGTTATTGAAAATGGTACTATGGAGACTAGAAATGGAGATAGT
TCTGAAGAGGTTCAGGCATCTTGTGACAGTAGTGAAAAAACTAAAAGTCACGTTGCTACAAAATCTCTAGATGAAGAGGAGGTTTCTTTTCTTCATTCTCTTGGATGGGA
AGAGAAGTATAGTGAGGACGAAGGCCTTACTGAAGAAGAGATCAATGCTTTCTATCATGAGGTTTTGGTTAACAAGATTAGTCATCCCTCGGGTAGGGCTCTGTTAGAGA
AACCATCTCAAACCTTGATCTGA

mRNA sequence

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Protein sequence

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MPSVPHASLRIPNNSNVSSMECKIASLDLKFGSTLEKRPSLSQVQIQNDFFNLIKKKSSMSSYVVLSDSCISVKSPSIGQSNELTREEINIPASPHVIENGTMETRNGDS
SEEVQASCDSSEKTKSHVATKSLDEEEVSFLHSLGWEEKYSEDEGLTEEEINAFYHEVLVNKISHPSGRALLEKPSQTLI

Tan0012885 (gene) of Snake gourd v1 genome