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Tan0012914 (gene) of Snake gourd v1 genome

Gene IDTan0012914
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationLG08:44511190..44513172
RNA-Seq ExpressionTan0012914
SyntenyTan0012914
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026281.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-0955.17Show/hide
Query:  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW
        E+ D      +C+    ER     LLNPL +LEWKWEH+T+DFLFGLPRT+ GH+GIW
Subjt:  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW

KAA0041696.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-0987.88Show/hide
Query:  LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW
        LNPL +LEWKWEHIT+DFLFGLPRTS GHDGIW
Subjt:  LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW

KAA0043587.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-0987.88Show/hide
Query:  LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW
        LNPLL+ EWKWEHIT+DFLFGLPRTS GHDGIW
Subjt:  LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW

KAA0062172.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-0956.9Show/hide
Query:  IVREVNDVCWLHAVCRAKL--AERLLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW
        I+ E +   +    C  K+   E  LNPL + EWKWEHIT+DFLFGLPRTS GHDGIW
Subjt:  IVREVNDVCWLHAVCRAKL--AERLLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW

TYK21477.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-0955.17Show/hide
Query:  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW
        E+ D      +C+    ER     LLNPL +LEWKWEH+T+DFLFGLPRT+ GH+GIW
Subjt:  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW

TrEMBL top hitse value%identityAlignment
A0A5A7SQ03 Reverse transcriptase1.2e-0955.17Show/hide
Query:  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW
        E+ D      +C+    ER     LLNPL +LEWKWEH+T+DFLFGLPRT+ GH+GIW
Subjt:  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW

A0A5A7SZT6 Reverse transcriptase1.5e-0984.85Show/hide
Query:  LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW
        LNPL +LEWKWEHIT+DFLFGLPRTS GHDG+W
Subjt:  LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW

A0A5A7V1T4 Reverse transcriptase5.2e-1056.9Show/hide
Query:  IVREVNDVCWLHAVCRAKL--AERLLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW
        I+ E +   +    C  K+   E  LNPL + EWKWEHIT+DFLFGLPRTS GHDGIW
Subjt:  IVREVNDVCWLHAVCRAKL--AERLLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW

A0A5D3CQ39 Reverse transcriptase1.5e-0984.85Show/hide
Query:  LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW
        LNPL +LEWKWEHIT+DFLFGLPRTS GHDG+W
Subjt:  LNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW

A0A5D3DCU0 Reverse transcriptase1.2e-0955.17Show/hide
Query:  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW
        E+ D      +C+    ER     LLNPL +LEWKWEH+T+DFLFGLPRT+ GH+GIW
Subjt:  EVNDVCWLHAVCRAKLAER-----LLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTTAGTGTGCTTATCAGGTAAAAC
AGGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGAAAGACTCCTTAATCCATTGCTATTGCTGGAATGGA
AATGGGAGCATATCACTATAGATTTTCTTTTTGGATTACCGCGTACTTCATGTGGACATGATGGTATTTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGACATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATAACCTGCCATATTTAGTGTGCTTATCAGGTAAAAC
AGGGTCAACAGGTATCGTTAGAGAGGTGAACGATGTCTGTTGGCTTCACGCCGTCTGCCGGGCTAAGTTAGCAGAAAGACTCCTTAATCCATTGCTATTGCTGGAATGGA
AATGGGAGCATATCACTATAGATTTTCTTTTTGGATTACCGCGTACTTCATGTGGACATGATGGTATTTGGTAA
Protein sequenceShow/hide protein sequence
MTETLSPRLYGTVCTQVEIELPVPDNLPYLVCLSGKTGSTGIVREVNDVCWLHAVCRAKLAERLLNPLLLLEWKWEHITIDFLFGLPRTSCGHDGIW