; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0012924 (gene) of Snake gourd v1 genome

Gene IDTan0012924
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG03:19915675..19920718
RNA-Seq ExpressionTan0012924
SyntenyTan0012924
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-0852.56Show/hide
Query:  PLSTLSVLRDNNVVVSAGRAPLRQRRWDKR-------WLYWACPTQQIELLIPDILPKSAESSTSDILYVVGLYSKSL
        PLSTLSVL DN+ VVSAG+APLRQRRW+ R       +  ++    +IEL +PDILP SAESS S+    + LY +S+
Subjt:  PLSTLSVLRDNNVVVSAGRAPLRQRRWDKR-------WLYWACPTQQIELLIPDILPKSAESSTSDILYVVGLYSKSL

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.6e-0841.46Show/hide
Query:  NQRLF--YNKGKRKKMKKGKWMLEALWYRVHTSHIPLSTLSVLRDNNVVVSAG------------RAPLRQRRWDKRWLYWACPTQ--------------
        NQ+L+  + +G R  ++ G+           T    LSTLSVLRDN+ VVSAG            RAPL  RR  KRWLYWACPT               
Subjt:  NQRLF--YNKGKRKKMKKGKWMLEALWYRVHTSHIPLSTLSVLRDNNVVVSAG------------RAPLRQRRWDKRWLYWACPTQ--------------

Query:  ---QIELLIPDILPKSAESSTSD
           +IEL +PD LP SAESS S+
Subjt:  ---QIELLIPDILPKSAESSTSD

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.6e-0841.46Show/hide
Query:  NQRLF--YNKGKRKKMKKGKWMLEALWYRVHTSHIPLSTLSVLRDNNVVVSAG------------RAPLRQRRWDKRWLYWACPTQ--------------
        NQ+L+  + +G R  ++ G+           T    LSTLSVLRDN+ VVSAG            RAPL  RR  KRWLYWACPT               
Subjt:  NQRLF--YNKGKRKKMKKGKWMLEALWYRVHTSHIPLSTLSVLRDNNVVVSAG------------RAPLRQRRWDKRWLYWACPTQ--------------

Query:  ---QIELLIPDILPKSAESSTSD
           +IEL +PD LP SAESS S+
Subjt:  ---QIELLIPDILPKSAESSTSD

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]2.1e-0856.92Show/hide
Query:  YRVHTSHIPLSTLSVLRDNNVVV------------SAGRAPLRQRRWDKRWLYWACPTQQIELLI
        YRVHTS+I L TLSVLRDNNV++            SAGR PL  RR  KRWLYWAC TQ+ E+++
Subjt:  YRVHTSHIPLSTLSVLRDNNVVV------------SAGRAPLRQRRWDKRWLYWACPTQQIELLI

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-0852.56Show/hide
Query:  PLSTLSVLRDNNVVVSAGRAPLRQRRWDKR-------WLYWACPTQQIELLIPDILPKSAESSTSDILYVVGLYSKSL
        PLSTLSVL DN+ VVSAG+APLRQRRW+ R       +  ++    +IEL +PDILP SAESS S+    + LY +S+
Subjt:  PLSTLSVLRDNNVVVSAGRAPLRQRRWDKR-------WLYWACPTQQIELLIPDILPKSAESSTSDILYVVGLYSKSL

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.7e-0852.56Show/hide
Query:  PLSTLSVLRDNNVVVSAGRAPLRQRRWDKR-------WLYWACPTQQIELLIPDILPKSAESSTSDILYVVGLYSKSL
        PLSTLSVL DN+ VVSAG+APLRQRRW+ R       +  ++    +IEL +PDILP SAESS S+    + LY +S+
Subjt:  PLSTLSVLRDNNVVVSAGRAPLRQRRWDKR-------WLYWACPTQQIELLIPDILPKSAESSTSDILYVVGLYSKSL

A0A5A7VGQ5 Uncharacterized protein1.7e-0841.46Show/hide
Query:  NQRLF--YNKGKRKKMKKGKWMLEALWYRVHTSHIPLSTLSVLRDNNVVVSAG------------RAPLRQRRWDKRWLYWACPTQ--------------
        NQ+L+  + +G R  ++ G+           T    LSTLSVLRDN+ VVSAG            RAPL  RR  KRWLYWACPT               
Subjt:  NQRLF--YNKGKRKKMKKGKWMLEALWYRVHTSHIPLSTLSVLRDNNVVVSAG------------RAPLRQRRWDKRWLYWACPTQ--------------

Query:  ---QIELLIPDILPKSAESSTSD
           +IEL +PD LP SAESS S+
Subjt:  ---QIELLIPDILPKSAESSTSD

A0A5D3BG85 Uncharacterized protein1.7e-0841.46Show/hide
Query:  NQRLF--YNKGKRKKMKKGKWMLEALWYRVHTSHIPLSTLSVLRDNNVVVSAG------------RAPLRQRRWDKRWLYWACPTQ--------------
        NQ+L+  + +G R  ++ G+           T    LSTLSVLRDN+ VVSAG            RAPL  RR  KRWLYWACPT               
Subjt:  NQRLF--YNKGKRKKMKKGKWMLEALWYRVHTSHIPLSTLSVLRDNNVVVSAG------------RAPLRQRRWDKRWLYWACPTQ--------------

Query:  ---QIELLIPDILPKSAESSTSD
           +IEL +PD LP SAESS S+
Subjt:  ---QIELLIPDILPKSAESSTSD

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein1.0e-0856.92Show/hide
Query:  YRVHTSHIPLSTLSVLRDNNVVV------------SAGRAPLRQRRWDKRWLYWACPTQQIELLI
        YRVHTS+I L TLSVLRDNNV++            SAGR PL  RR  KRWLYWAC TQ+ E+++
Subjt:  YRVHTSHIPLSTLSVLRDNNVVV------------SAGRAPLRQRRWDKRWLYWACPTQQIELLI

A0A5D3BTP3 Reverse transcriptase1.7e-0852.56Show/hide
Query:  PLSTLSVLRDNNVVVSAGRAPLRQRRWDKR-------WLYWACPTQQIELLIPDILPKSAESSTSDILYVVGLYSKSL
        PLSTLSVL DN+ VVSAG+APLRQRRW+ R       +  ++    +IEL +PDILP SAESS S+    + LY +S+
Subjt:  PLSTLSVLRDNNVVVSAGRAPLRQRRWDKR-------WLYWACPTQQIELLIPDILPKSAESSTSDILYVVGLYSKSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTCTTCTGCTGCCTGCACACCGAGGACAAATGACCCGTCTTCCCACAATTGTAACAAATCATGTTCTAGGACAACCACACCACCATACAAAGCATCACACAACCC
GCCCACGAACTTGTCTACCTTCTTCTTTTCCATGTCTACCCAGTCGACTGCAAAACGGGACAACACATACAACCAACGTTTATTCTACAATAAAGGAAAAAGGAAAAAAA
TGAAAAAGGGAAAGTGGATGCTCGAGGCTTTATGGTACCGTGTGCACACAAGTCATATTCCATTGTCGACGTTGAGTGTACTCCGTGACAACAATGTTGTCGTGAGTGCT
GGGCGGGCCCCACTACGACAAAGACGATGGGATAAACGTTGGTTGTACTGGGCGTGCCCTACACAACAGATCGAGCTCCTGATACCTGACATCCTGCCAAAGTCTGCTGA
AAGCTCCACAAGTGATATTTTGTACGTGGTTGGGTTGTATAGCAAGTCCTTATGTATTGTAGTTAGTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTCTTCTGCTGCCTGCACACCGAGGACAAATGACCCGTCTTCCCACAATTGTAACAAATCATGTTCTAGGACAACCACACCACCATACAAAGCATCACACAACCC
GCCCACGAACTTGTCTACCTTCTTCTTTTCCATGTCTACCCAGTCGACTGCAAAACGGGACAACACATACAACCAACGTTTATTCTACAATAAAGGAAAAAGGAAAAAAA
TGAAAAAGGGAAAGTGGATGCTCGAGGCTTTATGGTACCGTGTGCACACAAGTCATATTCCATTGTCGACGTTGAGTGTACTCCGTGACAACAATGTTGTCGTGAGTGCT
GGGCGGGCCCCACTACGACAAAGACGATGGGATAAACGTTGGTTGTACTGGGCGTGCCCTACACAACAGATCGAGCTCCTGATACCTGACATCCTGCCAAAGTCTGCTGA
AAGCTCCACAAGTGATATTTTGTACGTGGTTGGGTTGTATAGCAAGTCCTTATGTATTGTAGTTAGTGTTTGA
Protein sequenceShow/hide protein sequence
MLSSAACTPRTNDPSSHNCNKSCSRTTTPPYKASHNPPTNLSTFFFSMSTQSTAKRDNTYNQRLFYNKGKRKKMKKGKWMLEALWYRVHTSHIPLSTLSVLRDNNVVVSA
GRAPLRQRRWDKRWLYWACPTQQIELLIPDILPKSAESSTSDILYVVGLYSKSLCIVVSV