; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0012957 (gene) of Snake gourd v1 genome

Gene IDTan0012957
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotransposon protein
Genome locationLG02:44986905..44989482
RNA-Seq ExpressionTan0012957
SyntenyTan0012957
Gene Ontology termsNA
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-4258.23Show/hide
Query:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL
        EL +I+     SQRQLL+ L +L N+ +R+ H     R +IR L +FR+I+ +DL CR+STRMDRR F ILC +L++  GL  T+ VD+EEMVA+FLHIL
Subjt:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL

Query:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE
        A DVKNRVI+R+F RSGET+SRH N VL AV++LHD LLKKP+P+ N  TD+RW+WFE
Subjt:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-4258.23Show/hide
Query:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL
        EL +I+     SQRQLL+ L +L N+ +R+ H     R +IR L +FR+I+ +DL CR+STRMDRR F ILC +L++  GL  T+ VD+EEMVA+FLHIL
Subjt:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL

Query:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE
        A DVKNRVI+R+F RSGET+SRH N VL AV++LHD LLKKP+P+ N  TD+RW+WFE
Subjt:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-4258.23Show/hide
Query:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL
        EL +I+     SQRQLL+ L +L N+ +R+ H     R +IR L +FR+I+ +DL CR+STRMDRR F ILC +L++  GL  T+ VD+EEMVA+FLHIL
Subjt:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL

Query:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE
        A DVKNRVI+R+F RSGET+SRH N VL AV++LH+ LLKKP+P+ N  TD+RWKWFE
Subjt:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE

KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-4458.49Show/hide
Query:  EELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHI
        + L  +LT  T +QRQ+L+ L +L+NN +RL H  P  R +IR L +FR+I+E+DL CR+STRMDRRTF ILC +L++  GL  T+ VD+EEMVA+FLH+
Subjt:  EELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHI

Query:  LADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE
        LA DVKNRVI+R+F RSGETVSRH N VL AVL+L++ L+K+P P+T+N  D+RWK FE
Subjt:  LADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-4256.96Show/hide
Query:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL
        EL +I+     SQRQLL+ L +L N+ +R+ H     R +IR L +FR+I+E+DL CR+STRMDRR F ILC +L++  GL  T+ VD+EEMVA+FLHIL
Subjt:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL

Query:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE
        A DVKNRVI+R+F RSGET+ RH N +  AV++LHD LLKKP+P+ N  TD+RW+WFE
Subjt:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein8.6e-4358.23Show/hide
Query:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL
        EL +I+     SQRQLL+ L +L N+ +R+ H     R +IR L +FR+I+ +DL CR+STRMDRR F ILC +L++  GL  T+ VD+EEMVA+FLHIL
Subjt:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL

Query:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE
        A DVKNRVI+R+F RSGET+SRH N VL AV++LHD LLKKP+P+ N  TD+RW+WFE
Subjt:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE

A0A5A7TXW1 Retrotransposon protein8.6e-4358.23Show/hide
Query:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL
        EL +I+     SQRQLL+ L +L N+ +R+ H     R +IR L +FR+I+ +DL CR+STRMDRR F ILC +L++  GL  T+ VD+EEMVA+FLHIL
Subjt:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL

Query:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE
        A DVKNRVI+R+F RSGET+SRH N VL AV++LHD LLKKP+P+ N  TD+RW+WFE
Subjt:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE

A0A5A7U476 Retrotransposon protein1.1e-4258.23Show/hide
Query:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL
        EL +I+     SQRQLL+ L +L N+ +R+ H     R +IR L +FR+I+ +DL CR+STRMDRR F ILC +L++  GL  T+ VD+EEMVA+FLHIL
Subjt:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL

Query:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE
        A DVKNRVI+R+F RSGET+SRH N VL AV++LH+ LLKKP+P+ N  TD+RWKWFE
Subjt:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE

A0A5A7UUT3 Retrotransposon protein1.2e-4458.49Show/hide
Query:  EELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHI
        + L  +LT  T +QRQ+L+ L +L+NN +RL H  P  R +IR L +FR+I+E+DL CR+STRMDRRTF ILC +L++  GL  T+ VD+EEMVA+FLH+
Subjt:  EELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHI

Query:  LADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE
        LA DVKNRVI+R+F RSGETVSRH N VL AVL+L++ L+K+P P+T+N  D+RWK FE
Subjt:  LADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE

A0A5D3BDX0 Retrotransposon protein2.5e-4257.59Show/hide
Query:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL
        EL +I+     SQRQLL+ L +L N+ +R+ H     R +IR L +FR+I+ +DL CR+STRMDRR F ILC +L++  GL  T+ VD+EEMVA+FLHIL
Subjt:  ELFNILTIMTMSQRQLLINLGVLLNNYRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHIL

Query:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE
        A DVKNRVI+R+F RSGET+SRH N VL AV++LH+ LLKKP+P+ N  TD+RW+WFE
Subjt:  ADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHDLLLKKPEPITNNYTDERWKWFE

SwissProt top hitse value%identityAlignment
Q07762 Ribonuclease H4.5e-0441.67Show/hide
Query:  KAKFYVVFIGRHPGIYKTWYACHREVNEYRGAIHQSYASFAEAEYAFT
        K  FYVV +GR  GIY TW  C  +V  + GA+++S+ + +EA    T
Subjt:  KAKFYVVFIGRHPGIYKTWYACHREVNEYRGAIHQSYASFAEAEYAFT

Q9KEI9 Ribonuclease H5.6e-0755.1Show/hide
Query:  MGKAKFYVVFIGRHPGIYKTWYACHREVNEYRGAIHQSYASFAEAEYAF
        M K+K+YVV+ GR PGIY +W AC  +V  Y GA  +SY S  EAE AF
Subjt:  MGKAKFYVVFIGRHPGIYKTWYACHREVNEYRGAIHQSYASFAEAEYAF

Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein9.5e-1037.04Show/hide
Query:  LNNYRRLEHRSPYD-RRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHILADDVKNRVIRRQFARSGETVSR
        LN Y R   R+P    R +   N +R + ++   C +  RM    FT LC ML++   L PT N+ IEE VA+FL I   +   R +  +F R+ ETV R
Subjt:  LNNYRRLEHRSPYD-RRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHILADDVKNRVIRRQFARSGETVSR

Query:  HLNSVLNA
            VL A
Subjt:  HLNSVLNA

AT5G28730.1 unknown protein1.1e-0837.65Show/hide
Query:  IYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHILADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQL
        IY N++ C+   RM    FT LC +L    GL  + N+ ++E VAIFL I A +   R I  +F  + ET+ R  + VL A+ +L
Subjt:  IYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHILADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQL

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)2.1e-1243.59Show/hide
Query:  CRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHILADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQL
        C E+ RMD+  F  LC +L++ G L  T  + IE  +AIFL I+  +++ R ++  F  SGET+SRH N+VLNAV+ +
Subjt:  CRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHILADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAAAGCGAAGTTCTACGTGGTCTTCATCGGTCGTCACCCAGGGATTTACAAGACATGGTATGCATGTCATAGAGAAGTAAATGAATATAGGGGAGCAATCCACCA
ATCATATGCATCTTTTGCAGAGGCAGAATATGCATTTACTGAATTTATCATTCGGAACAATGAACATTCCACTACGACAGTTCCTCTTGGACATCTGTGCAATGATAAAC
TAATCATTTTGGTTGTGATGGAAACGGTCGAAGAACTGTTTAATATCTTAACAATAATGACCATGTCTCAAAGGCAATTGTTAATAAACCTAGGAGTACTATTGAACAAT
TACCGGCGATTAGAGCATCGATCACCATACGACCGACGTCAAATTAGGCATCTGAATTTCTTTCGCCTTATTTATGAGAACGACCTATGTTGTCGCGAAAGCACAAGAAT
GGATAGAAGGACCTTCACCATCCTGTGTACTATGCTAAAGTCGACTGGTGGTTTAGTACCGACACAGAATGTTGATATCGAAGAAATGGTTGCTATATTCTTGCACATCC
TGGCAGATGATGTTAAGAATCGGGTGATTCGCAGGCAATTTGCCCGGTCCGGTGAGACGGTTTCTAGACACTTAAACTCAGTGCTAAACGCAGTTTTACAACTACACGAC
TTGTTGTTGAAAAAACCAGAACCAATCACCAACAACTACACTGATGAGCGATGGAAATGGTTTGAGGAAGCGGACTCTGGAGCAAATAGTAGCGAAGGGGAAAATATACA
ATTCATTGAAAGCTCCGACGAATGGACCCAATTTAGGGATGACTTGGCAAATGAAATCAAATGGAGGAGGAGATTCGGTTGGGATCACAAGACTTCATGGGAGGGGAACA
ACGAACAATGGAGAATCCAGGAATTGGTGACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTAAAGCGAAGTTCTACGTGGTCTTCATCGGTCGTCACCCAGGGATTTACAAGACATGGTATGCATGTCATAGAGAAGTAAATGAATATAGGGGAGCAATCCACCA
ATCATATGCATCTTTTGCAGAGGCAGAATATGCATTTACTGAATTTATCATTCGGAACAATGAACATTCCACTACGACAGTTCCTCTTGGACATCTGTGCAATGATAAAC
TAATCATTTTGGTTGTGATGGAAACGGTCGAAGAACTGTTTAATATCTTAACAATAATGACCATGTCTCAAAGGCAATTGTTAATAAACCTAGGAGTACTATTGAACAAT
TACCGGCGATTAGAGCATCGATCACCATACGACCGACGTCAAATTAGGCATCTGAATTTCTTTCGCCTTATTTATGAGAACGACCTATGTTGTCGCGAAAGCACAAGAAT
GGATAGAAGGACCTTCACCATCCTGTGTACTATGCTAAAGTCGACTGGTGGTTTAGTACCGACACAGAATGTTGATATCGAAGAAATGGTTGCTATATTCTTGCACATCC
TGGCAGATGATGTTAAGAATCGGGTGATTCGCAGGCAATTTGCCCGGTCCGGTGAGACGGTTTCTAGACACTTAAACTCAGTGCTAAACGCAGTTTTACAACTACACGAC
TTGTTGTTGAAAAAACCAGAACCAATCACCAACAACTACACTGATGAGCGATGGAAATGGTTTGAGGAAGCGGACTCTGGAGCAAATAGTAGCGAAGGGGAAAATATACA
ATTCATTGAAAGCTCCGACGAATGGACCCAATTTAGGGATGACTTGGCAAATGAAATCAAATGGAGGAGGAGATTCGGTTGGGATCACAAGACTTCATGGGAGGGGAACA
ACGAACAATGGAGAATCCAGGAATTGGTGACATAG
Protein sequenceShow/hide protein sequence
MGKAKFYVVFIGRHPGIYKTWYACHREVNEYRGAIHQSYASFAEAEYAFTEFIIRNNEHSTTTVPLGHLCNDKLIILVVMETVEELFNILTIMTMSQRQLLINLGVLLNN
YRRLEHRSPYDRRQIRHLNFFRLIYENDLCCRESTRMDRRTFTILCTMLKSTGGLVPTQNVDIEEMVAIFLHILADDVKNRVIRRQFARSGETVSRHLNSVLNAVLQLHD
LLLKKPEPITNNYTDERWKWFEEADSGANSSEGENIQFIESSDEWTQFRDDLANEIKWRRRFGWDHKTSWEGNNEQWRIQELVT