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Tan0012984 (gene) of Snake gourd v1 genome

Gene IDTan0012984
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRING-H2 finger protein ATL56-like
Genome locationLG05:70384348..70385675
RNA-Seq ExpressionTan0012984
SyntenyTan0012984
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF52023.1 conserved hypothetical protein [Ricinus communis]2.9e-3859.59Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFR-----GE--GEGIIWRSNFG-KRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERC
        M MEI+VS VLL VGIAVLV IHVCIVGRAFR     G+  G G    S +G K++SNE+L+ LPC++YK  EK+ +++      +CVVCLENF +G++C
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFR-----GE--GEGIIWRSNFG-KRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERC

Query:  RLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPNA
        +LLPNC+HSFH QCIDSWL+KTPICPICRT    PK+GLVL Q ++
Subjt:  RLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPNA

KAE8124192.1 hypothetical protein FH972_019098 [Carpinus fangiana]1.0e-3859.31Show/hide
Query:  MEIVVSAVLLLVGIAVLVVIHVCIVGRAFRG-----EGEGIIWR-SNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLP
        ME+VVS VLL VGI VLV+IH+CI GRAFRG     +G  ++ R SN  KR+S  DLE+LPC++YK  EK  ++      ++C VCL+NFKMG++CRLLP
Subjt:  MEIVVSAVLLLVGIAVLVVIHVCIVGRAFRG-----EGEGIIWR-SNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLP

Query:  NCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPNAGAR
        NCRHSFHVQCIDSWLLKTPICPICRT    PKI ++L +  + +R
Subjt:  NCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPNAGAR

XP_015868270.1 RING-H2 finger protein ATL74-like [Ziziphus jujuba]7.7e-3959.87Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEG----IIWRSNFG-KRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLL
        MVMEIV+S +LL VGIAVLVVIHVCIVGRAF    +G    ++ RS+ G KR+SNEDL+ LPC++Y  G  + +++     ++C VCLENFK GE+CRLL
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEG----IIWRSNFG-KRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLL

Query:  PNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVL-EQPNAGARRQIEL
        PNCRHSFH  CIDSWLLKTPICPICRTCA  PK+ ++L E  +   +  IEL
Subjt:  PNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVL-EQPNAGARRQIEL

XP_022954431.1 RING-H2 finger protein ATL56-like [Cucurbita moschata]1.3e-5786.86Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIIWRSNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRH
        MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGE EG IWRSN GK LSN+DLEKLPCYEYK GEKQ TN    +DLECVVCLE FK GERCRLLPNCRH
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIIWRSNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRH

Query:  SFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN
        SFHV+CIDSWLLKTPICPICRTCAVVPK GLVLE  N
Subjt:  SFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN

XP_022994122.1 RING-H2 finger protein ATL56-like [Cucurbita maxima]3.7e-5786.13Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIIWRSNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRH
        MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGE EG IWRSN GK LSN+DLEKLPCYEYK GEKQ TN    +DLECVVCLE FK GERCRLLPNCRH
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIIWRSNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRH

Query:  SFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN
        SFHV+CIDSWLLKTPICPICRTCA VPK GLVLE  N
Subjt:  SFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN

TrEMBL top hitse value%identityAlignment
A0A5N6RPJ5 RING-type domain-containing protein4.9e-3959.31Show/hide
Query:  MEIVVSAVLLLVGIAVLVVIHVCIVGRAFRG-----EGEGIIWR-SNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLP
        ME+VVS VLL VGI VLV+IH+CI GRAFRG     +G  ++ R SN  KR+S  DLE+LPC++YK  EK  ++      ++C VCL+NFKMG++CRLLP
Subjt:  MEIVVSAVLLLVGIAVLVVIHVCIVGRAFRG-----EGEGIIWR-SNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLP

Query:  NCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPNAGAR
        NCRHSFHVQCIDSWLLKTPICPICRT    PKI ++L +  + +R
Subjt:  NCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPNAGAR

A0A6J1GQW8 RING-H2 finger protein ATL56-like6.1e-5886.86Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIIWRSNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRH
        MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGE EG IWRSN GK LSN+DLEKLPCYEYK GEKQ TN    +DLECVVCLE FK GERCRLLPNCRH
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIIWRSNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRH

Query:  SFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN
        SFHV+CIDSWLLKTPICPICRTCAVVPK GLVLE  N
Subjt:  SFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN

A0A6J1JUU5 RING-H2 finger protein ATL56-like1.8e-5786.13Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIIWRSNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRH
        MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGE EG IWRSN GK LSN+DLEKLPCYEYK GEKQ TN    +DLECVVCLE FK GERCRLLPNCRH
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIIWRSNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRH

Query:  SFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN
        SFHV+CIDSWLLKTPICPICRTCA VPK GLVLE  N
Subjt:  SFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN

A0A6P3YXL3 RING-H2 finger protein ATL74-like3.7e-3959.87Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEG----IIWRSNFG-KRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLL
        MVMEIV+S +LL VGIAVLVVIHVCIVGRAF    +G    ++ RS+ G KR+SNEDL+ LPC++Y  G  + +++     ++C VCLENFK GE+CRLL
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEG----IIWRSNFG-KRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLL

Query:  PNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVL-EQPNAGARRQIEL
        PNCRHSFH  CIDSWLLKTPICPICRTCA  PK+ ++L E  +   +  IEL
Subjt:  PNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVL-EQPNAGARRQIEL

B9RB46 RING-type domain-containing protein1.4e-3859.59Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFR-----GE--GEGIIWRSNFG-KRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERC
        M MEI+VS VLL VGIAVLV IHVCIVGRAFR     G+  G G    S +G K++SNE+L+ LPC++YK  EK+ +++      +CVVCLENF +G++C
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFR-----GE--GEGIIWRSNFG-KRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERC

Query:  RLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPNA
        +LLPNC+HSFH QCIDSWL+KTPICPICRT    PK+GLVL Q ++
Subjt:  RLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPNA

SwissProt top hitse value%identityAlignment
Q6NQG7 RING-H2 finger protein ATL789.9e-1338.55Show/hide
Query:  NFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAV
        N+  RL+N  +++     ++        N   LD EC +CL  F   ER +LLP C H FHV+CID WL     CP CR C +
Subjt:  NFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAV

Q7XLY8 E3 ubiquitin-protein ligase Os04g05909001.1e-1142.67Show/hide
Query:  KQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPNAGA
        K R  +G     +C VCL  F  GE  RLLP C H+FH QCID+WL     CP+CR       +GL   +P   A
Subjt:  KQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPNAGA

Q9LS99 RING-H2 finger protein ATL771.1e-1139.29Show/hide
Query:  SNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAV
        S+  K +  + L+ LP   Y         N   +  ECV+CL +F  GE+ R+LP C H FH++CID WL +   CP CR C V
Subjt:  SNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAV

Q9SG96 RING-H2 finger protein ATL724.9e-1250Show/hide
Query:  ECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN
        EC++CL +F+ GE+ R+LP C H FHV+CID+WLL    CP CR         L+LEQP+
Subjt:  ECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN

Q9SJJ7 RING-H2 finger protein ATL572.6e-1334.04Show/hide
Query:  NFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQP
        +F + L ++ +  LP Y Y    KQR         +CV+CL +F+ GE  +++P+C H FHV C+D+WL     CP+CR+  +     L +++P
Subjt:  NFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQP

Arabidopsis top hitse value%identityAlignment
AT1G49220.1 RING/U-box superfamily protein3.8e-1232Show/hide
Query:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIIWRSNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRH
        M++ I++  ++  +G+  ++    C + R+ R      +   +  +  SN+ ++K     + +       N   LD ECV+CL +F  GE+ RLLP C H
Subjt:  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIIWRSNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRH

Query:  SFHVQCIDSWLLKTPICPICRTCAV
         FHV+CID WL +   CP CR C V
Subjt:  SFHVQCIDSWLLKTPICPICRTCAV

AT1G49230.1 RING/U-box superfamily protein7.0e-1438.55Show/hide
Query:  NFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAV
        N+  RL+N  +++     ++        N   LD EC +CL  F   ER +LLP C H FHV+CID WL     CP CR C +
Subjt:  NFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAV

AT2G27940.1 RING/U-box superfamily protein1.8e-1434.04Show/hide
Query:  NFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQP
        +F + L ++ +  LP Y Y    KQR         +CV+CL +F+ GE  +++P+C H FHV C+D+WL     CP+CR+  +     L +++P
Subjt:  NFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQP

AT3G10910.1 RING/U-box superfamily protein3.5e-1350Show/hide
Query:  ECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN
        EC++CL +F+ GE+ R+LP C H FHV+CID+WLL    CP CR         L+LEQP+
Subjt:  ECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAVVPKIGLVLEQPN

AT3G18773.1 RING/U-box superfamily protein7.7e-1339.29Show/hide
Query:  SNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAV
        S+  K +  + L+ LP   Y         N   +  ECV+CL +F  GE+ R+LP C H FH++CID WL +   CP CR C V
Subjt:  SNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSWLLKTPICPICRTCAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATGGAGATTGTGGTGTCGGCTGTTCTGTTGCTGGTTGGGATCGCTGTTTTGGTAGTGATTCATGTATGTATTGTTGGGAGAGCTTTCAGAGGAGAAGGGGAAGG
GATTATTTGGAGAAGCAATTTTGGAAAGAGACTTTCAAATGAGGATTTGGAGAAGCTTCCTTGTTATGAGTACAAATTGGGGGAAAAACAGAGAACAAATAATGGAGTTG
ATTTGGATTTGGAATGTGTGGTTTGTTTGGAGAATTTCAAAATGGGGGAAAGATGCAGATTGTTGCCAAATTGCCGCCATAGTTTCCATGTTCAGTGCATAGATTCTTGG
CTTTTGAAGACACCCATTTGCCCAATTTGCAGAACTTGTGCTGTTGTGCCTAAAATTGGCTTGGTTTTGGAGCAGCCAAATGCTGGGGCTCGCCGCCAAATTGAGCTTAA
CTCAATTCATTGA
mRNA sequenceShow/hide mRNA sequence
AAATGAACCAAACAAAAGAGCTTCCAAAAGGGTGTTTGAGAAATATAAGAAATTTGTGACCCAATAAAGGACAGAGCCAGAAGAACACTCATTCATTACCAAATTCTTCT
CTCTCACTCTCTCTCTCTTTTTCTCTCTCTCTGCTTAAAACTTAAACCCACCAAACTCAATAGAATCATCACCATCACATGTTGATTTTACTACAGTGATTTCTCCAACC
CTTTTCTTCGTCAATAAAACAAAGCAAAAGCTGTAAGATTGAAGATCCAAGATGAGTGATTTCCACAAGTACTGACAGAGACTTTCAAACACAAAGCTCAACAAAAACAA
AACCAAAAAACAGACCCACAAAACCTTTCTGTGTTTTCTATTTTTTCCCCTGAGAAACTTTTGGGGTTGGTTGGTTTTTCAAATTCAAGTACTATGGTTATGGAGATTGT
GGTGTCGGCTGTTCTGTTGCTGGTTGGGATCGCTGTTTTGGTAGTGATTCATGTATGTATTGTTGGGAGAGCTTTCAGAGGAGAAGGGGAAGGGATTATTTGGAGAAGCA
ATTTTGGAAAGAGACTTTCAAATGAGGATTTGGAGAAGCTTCCTTGTTATGAGTACAAATTGGGGGAAAAACAGAGAACAAATAATGGAGTTGATTTGGATTTGGAATGT
GTGGTTTGTTTGGAGAATTTCAAAATGGGGGAAAGATGCAGATTGTTGCCAAATTGCCGCCATAGTTTCCATGTTCAGTGCATAGATTCTTGGCTTTTGAAGACACCCAT
TTGCCCAATTTGCAGAACTTGTGCTGTTGTGCCTAAAATTGGCTTGGTTTTGGAGCAGCCAAATGCTGGGGCTCGCCGCCAAATTGAGCTTAACTCAATTCATTGATGAC
CCTTTATAAGTGGAAGATGAAAAGGGTATGTGTGTTTTTTTTTTTTTTGTCAGTGGTTCAACAAGGTTTTTCAATCAAGCTCAGCTGACAAAGTGACAGCCAGTTCCGCC
GCCGTGTGCGGTGGCCGGAGAAAGATGAAGTTTAGAAGGAGCGCCGCCGCTGCCGCCGTTTGTAAGTGGGTTGGAAGTTATTACTGTAATTGGTAAAAAACTTGAAGAAT
TTGGCAAAGGGGAGGGGCTAAGAAGAAGAAAAAGAAGGGGGAAAAAGTGGTATTAATGGAGAATTTTTTGTGGATGGGGATTGTGGTCGAATATTTTTCTTGTCTGTAAC
TTTTTTTTTTTTTGGTTATATATTTGTTCTTGTTTTTTTTTTTTTTTTAATTTAAATTTTATTTTGTAATGTTGAAGATGAGGAATTTGGGAGATTGTGGTCTATTTTTT
ATTTTTTT
Protein sequenceShow/hide protein sequence
MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEGEGIIWRSNFGKRLSNEDLEKLPCYEYKLGEKQRTNNGVDLDLECVVCLENFKMGERCRLLPNCRHSFHVQCIDSW
LLKTPICPICRTCAVVPKIGLVLEQPNAGARRQIELNSIH