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Tan0013040 (gene) of Snake gourd v1 genome

Gene IDTan0013040
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionprotein RADIALIS-like 1
Genome locationLG02:7900021..7901667
RNA-Seq ExpressionTan0013040
SyntenyTan0013040
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572041.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]1.9e-2388.41Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        MASMSSR GS+AWT MQNKAFEKALAVYDQDTPERWL+VAKAVGEKTEEEVKRHYQLL+ D+K IESGN
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN

XP_022136148.1 protein RADIALIS-like 1 [Momordica charantia]2.9e-2491.3Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        MASMSSR GSSAWTAMQNKAFE+ALAVYDQDTPERWL+VAKAVGEKTEEEVKRHYQLLVED+K IESG+
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN

XP_022952273.1 protein RADIALIS-like 1 [Cucurbita moschata]1.9e-2388.41Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        MASMSSR GS+AWT MQNKAFEKALAVYDQDTPERWL+VAKAVGEKTEEEVKRHYQLL+ D+K IESGN
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN

XP_022972527.1 protein RADIALIS-like 1 [Cucurbita maxima]5.4e-2386.96Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        MASMSSR GS+AWT MQNKAFEKALAVYDQDTPERWL+VAK VGEKTEEEVKRHYQLL+ D+K IESGN
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN

XP_038888638.1 protein RADIALIS-like 1 [Benincasa hispida]3.2e-2386.96Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        MASMSS  GS+AWTAMQNK FEKALAVYDQDTPERWL+VAKAVGEKTEEEVKRHYQLL++D+K IESGN
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN

TrEMBL top hitse value%identityAlignment
A0A5A7T3V4 Protein RADIALIS-like 11.1e-2180.88Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG
        MASM++ G S+ WTA QNKAFEKALAVYD+DTPERWL+VAKA+G KTEEEVKRHYQLLVED+K IESG
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG

A0A6J1C385 protein RADIALIS-like 16.4e-2286.76Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG
        MASMSS  GSSAWTA QNKAFEKALAVYDQDTPERWL+VAKAVG KT EEVKRHY+LLVED+K IESG
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG

A0A6J1C6U4 protein RADIALIS-like 11.4e-2491.3Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        MASMSSR GSSAWTAMQNKAFE+ALAVYDQDTPERWL+VAKAVGEKTEEEVKRHYQLLVED+K IESG+
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN

A0A6J1GK35 protein RADIALIS-like 19.0e-2488.41Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        MASMSSR GS+AWT MQNKAFEKALAVYDQDTPERWL+VAKAVGEKTEEEVKRHYQLL+ D+K IESGN
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN

A0A6J1I517 protein RADIALIS-like 12.6e-2386.96Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        MASMSSR GS+AWT MQNKAFEKALAVYDQDTPERWL+VAK VGEKTEEEVKRHYQLL+ D+K IESGN
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.4e-1869.12Show/hide
Query:  ASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        +SMSS+  S +WTA QNKAFE+ALA YDQDTP RW +VAK VG KT EEVKRHY+LLV+DI  IE+G+
Subjt:  ASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN

Q1A173 Protein RADIALIS-like 61.0e-1667.65Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG
        MAS +SR   S WT  QNK FE+ALAVYD+DTP+RW +VAKAVG KT EEVKRHY +LVED+  IE+G
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG

Q58FS3 Transcription factor RADIALIS7.1e-1865.62Show/hide
Query:  SSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG
        S+RG    W+A +NKAFE+ALAVYD+DTP+RW +VA+AV  +T EEVK+HY++LVEDIK IESG
Subjt:  SSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG

Q8GW75 Protein RADIALIS-like 54.6e-1768.18Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIE
        MAS SS   SS+WT+ QNK FE+ALAVYD+DTP+RW +VAKAVG K+ EEVKRHY +LVED+  IE
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIE

Q9SIJ5 Protein RADIALIS-like 22.1e-1768.66Show/hide
Query:  SMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        SMSS  GS +WT  QNKAFE+ALAVYDQDTP+RW +VA+AVG KT EE KR Y LLV DI+ IE+G+
Subjt:  SMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.3e-1868.18Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIE
        MAS SS   SS+WT+ QNK FE+ALAVYD+DTP+RW +VAKAVG K+ EEVKRHY +LVED+  IE
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIE

AT1G75250.1 RAD-like 67.3e-1867.65Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG
        MAS +SR   S WT  QNK FE+ALAVYD+DTP+RW +VAKAVG KT EEVKRHY +LVED+  IE+G
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG

AT1G75250.2 RAD-like 67.3e-1867.65Show/hide
Query:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG
        MAS +SR   S WT  QNK FE+ALAVYD+DTP+RW +VAKAVG KT EEVKRHY +LVED+  IE+G
Subjt:  MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESG

AT2G21650.1 Homeodomain-like superfamily protein1.5e-1868.66Show/hide
Query:  SMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        SMSS  GS +WT  QNKAFE+ALAVYDQDTP+RW +VA+AVG KT EE KR Y LLV DI+ IE+G+
Subjt:  SMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN

AT4G39250.1 RAD-like 11.0e-1969.12Show/hide
Query:  ASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN
        +SMSS+  S +WTA QNKAFE+ALA YDQDTP RW +VAK VG KT EEVKRHY+LLV+DI  IE+G+
Subjt:  ASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCATCTCGTGGAGGATCAAGTGCATGGACTGCAATGCAAAACAAGGCGTTTGAGAAAGCTTTGGCAGTGTATGATCAAGACACGCCTGAAAGATGGCT
ACATGTTGCAAAGGCTGTTGGTGAGAAAACTGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATATCAAATGTATCGAGTCTGGCAATGATGAGAAACAAG
GAGCTCTCCATTGGATGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCATCTCGTGGAGGATCAAGTGCATGGACTGCAATGCAAAACAAGGCGTTTGAGAAAGCTTTGGCAGTGTATGATCAAGACACGCCTGAAAGATGGCT
ACATGTTGCAAAGGCTGTTGGTGAGAAAACTGAAGAGGAAGTCAAGAGGCACTACCAACTTCTTGTGGAGGATATCAAATGTATCGAGTCTGGCAATGATGAGAAACAAG
GAGCTCTCCATTGGATGAGCTGA
Protein sequenceShow/hide protein sequence
MASMSSRGGSSAWTAMQNKAFEKALAVYDQDTPERWLHVAKAVGEKTEEEVKRHYQLLVEDIKCIESGNDEKQGALHWMS