; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0013069 (gene) of Snake gourd v1 genome

Gene IDTan0013069
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationLG05:8571286..8571680
RNA-Seq ExpressionTan0013069
SyntenyTan0013069
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3951193.1 hypothetical protein CMV_023131 [Castanea mollissima]5.7e-1948.85Show/hide
Query:  MDLSASQHGTS---------------------CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASA
        M++ +SQHG+S                     CKRLEG  +E                RKL  +VSK  KILT  L+ KLV MV+CL+TLG+KPHEVASA
Subjt:  MDLSASQHGTS---------------------CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASA

Query:  IAKFPYMLFHSMEEKLCPLLACFQALDISEK
        I KFP++L HS+EEKLCPLLA FQAL + EK
Subjt:  IAKFPYMLFHSMEEKLCPLLACFQALDISEK

XP_023890765.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Quercus suber]5.7e-1948.85Show/hide
Query:  MDLSASQHGTS---------------------CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASA
        M++ +SQHG+S                     CKRLEG  +E                RKL  +VSK  KILT  L+ KLV MV+CL+TLG+KPHEVASA
Subjt:  MDLSASQHGTS---------------------CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASA

Query:  IAKFPYMLFHSMEEKLCPLLACFQALDISEK
        I KFP++L HS+EEKLCPLLA FQAL + EK
Subjt:  IAKFPYMLFHSMEEKLCPLLACFQALDISEK

XP_030943774.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Quercus lobata]5.7e-1948.85Show/hide
Query:  MDLSASQHGTS---------------------CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASA
        M++ +SQHG+S                     CKRLEG  +E                RKL  +VSK  KILT  L+ KLV MV+CL+TLG+KPHEVASA
Subjt:  MDLSASQHGTS---------------------CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASA

Query:  IAKFPYMLFHSMEEKLCPLLACFQALDISEK
        I KFP++L HS+EEKLCPLLA FQAL + EK
Subjt:  IAKFPYMLFHSMEEKLCPLLACFQALDISEK

XP_031269300.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Pistacia vera]1.3e-1848.85Show/hide
Query:  MDLSASQHGTS---------------------CKRLEGTYKEP--------------PRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASA
        M++S SQ+G+S                     CKRL+G  +E                RKL H+VSK  KILT  LN KLV MV+CL TLG+KP EVASA
Subjt:  MDLSASQHGTS---------------------CKRLEGTYKEP--------------PRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASA

Query:  IAKFPYMLFHSMEEKLCPLLACFQALDISEK
        I KFP++L HS+EEKLCPLLA FQAL + EK
Subjt:  IAKFPYMLFHSMEEKLCPLLACFQALDISEK

XP_031744171.1 LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus]3.8e-2361.68Show/hide
Query:  SASQHGTSCKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQ
        S S+    CK+LEG   E                R+LRHM SKY KILT  LNG LVLMV+CLATLGS PHE ASA+A+FPYMLFHSME+KLCP LA FQ
Subjt:  SASQHGTSCKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQ

Query:  ALDISEK
        ALDI EK
Subjt:  ALDISEK

TrEMBL top hitse value%identityAlignment
A0A061E9I9 Mitochondrial transcription termination factor family protein1.4e-1854.13Show/hide
Query:  DLSASQHGTSCKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLAC
        D S ++    CKRL+G  KE                RKL  +VS+  KILT  LN KLV MV+CLATLG+K HEVASAIA+FP+++ HS+EEKLCPLLA 
Subjt:  DLSASQHGTSCKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLAC

Query:  FQALDISEK
        FQAL + EK
Subjt:  FQALDISEK

A0A5N5N4V5 Uncharacterized protein1.0e-1856.57Show/hide
Query:  CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISEK
        CKRL+GT ++                RK+  ++SK  KILT  LN KL+ MV+CL TLGSKPHEVASAI KFP++L HS+EEKLCPLLA FQAL + EK
Subjt:  CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISEK

A0A6N2M192 Uncharacterized protein1.0e-1856.57Show/hide
Query:  CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISEK
        CKRL+GT ++                RK+  ++SK  KILT  LN KL+ MV+CL TLGSKPHEVASAI KFP++L HS+EEKLCPLLA FQAL + EK
Subjt:  CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISEK

A0A7N2N0V2 Uncharacterized protein2.7e-1948.85Show/hide
Query:  MDLSASQHGTS---------------------CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASA
        M++ +SQHG+S                     CKRLEG  +E                RKL  +VSK  KILT  L+ KLV MV+CL+TLG+KPHEVASA
Subjt:  MDLSASQHGTS---------------------CKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASA

Query:  IAKFPYMLFHSMEEKLCPLLACFQALDISEK
        I KFP++L HS+EEKLCPLLA FQAL + EK
Subjt:  IAKFPYMLFHSMEEKLCPLLACFQALDISEK

W9QU02 Uncharacterized protein1.0e-1854.13Show/hide
Query:  DLSASQHGTSCKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLAC
        D S ++    CKRLEG  +E                RKL H++SK  KILT  L+ KLV  V+CL TLG+KP EVASAIAKFP++L+HS+EEKLCPLLA 
Subjt:  DLSASQHGTSCKRLEGTYKE--------------PPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLAC

Query:  FQALDISEK
        FQ L I EK
Subjt:  FQALDISEK

SwissProt top hitse value%identityAlignment
Q9SZL6 Transcription termination factor MTERF6, chloroplastic/mitochondrial6.1e-1661.11Show/hide
Query:  RKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISE
        RKL ++VS+  KILT  L+ +L+ MV+CL++LG  P EVASAI KFP +L HS+EEKLCPLLA FQAL + E
Subjt:  RKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISE

Arabidopsis top hitse value%identityAlignment
AT4G38160.1 Mitochondrial transcription termination factor family protein4.3e-1761.11Show/hide
Query:  RKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISE
        RKL ++VS+  KILT  L+ +L+ MV+CL++LG  P EVASAI KFP +L HS+EEKLCPLLA FQAL + E
Subjt:  RKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISE

AT4G38160.2 Mitochondrial transcription termination factor family protein4.3e-1761.11Show/hide
Query:  RKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISE
        RKL ++VS+  KILT  L+ +L+ MV+CL++LG  P EVASAI KFP +L HS+EEKLCPLLA FQAL + E
Subjt:  RKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISE

AT4G38160.3 Mitochondrial transcription termination factor family protein4.3e-1761.11Show/hide
Query:  RKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISE
        RKL ++VS+  KILT  L+ +L+ MV+CL++LG  P EVASAI KFP +L HS+EEKLCPLLA FQAL + E
Subjt:  RKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGAGCGCCAGCCAACATGGTACCAGTTGCAAACGGCTTGAAGGTACGTATAAAGAACCGCCTAGAAAGCTCCGTCACATGGTTTCCAAGTACCTTAAAATTCT
TACTACATATCTGAATGGAAAGCTTGTTCTCATGGTTGATTGTCTTGCAACACTGGGTAGTAAGCCCCATGAAGTTGCTTCGGCCATTGCCAAATTTCCTTACATGCTTT
TTCATAGCATGGAAGAGAAGCTGTGCCCGCTTTTGGCTTGCTTTCAGGCATTGGATATATCTGAGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGAGCGCCAGCCAACATGGTACCAGTTGCAAACGGCTTGAAGGTACGTATAAAGAACCGCCTAGAAAGCTCCGTCACATGGTTTCCAAGTACCTTAAAATTCT
TACTACATATCTGAATGGAAAGCTTGTTCTCATGGTTGATTGTCTTGCAACACTGGGTAGTAAGCCCCATGAAGTTGCTTCGGCCATTGCCAAATTTCCTTACATGCTTT
TTCATAGCATGGAAGAGAAGCTGTGCCCGCTTTTGGCTTGCTTTCAGGCATTGGATATATCTGAGAAGTAG
Protein sequenceShow/hide protein sequence
MDLSASQHGTSCKRLEGTYKEPPRKLRHMVSKYLKILTTYLNGKLVLMVDCLATLGSKPHEVASAIAKFPYMLFHSMEEKLCPLLACFQALDISEK