; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0013088 (gene) of Snake gourd v1 genome

Gene IDTan0013088
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionrecQ-mediated genome instability protein 2
Genome locationLG08:25692214..25693812
RNA-Seq ExpressionTan0013088
SyntenyTan0013088
Gene Ontology termsGO:0009555 - pollen development (biological process)
GO:0033045 - regulation of sister chromatid segregation (biological process)
GO:0043007 - maintenance of rDNA (biological process)
GO:2000042 - negative regulation of double-strand break repair via homologous recombination (biological process)
GO:0005829 - cytosol (cellular component)
GO:0016607 - nuclear speck (cellular component)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR032245 - RecQ-mediated genome instability protein 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462275.1 PREDICTED: recQ-mediated genome instability protein 2 [Cucumis melo]1.1e-5582.96Show/hide
Query:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH
        MDYSLAALKL+C QLKDAR TPS+ TATL GILFQR WLQGILVSVD  N K ILDDGTGTVELSL R+F LR W+LGMYVMVVGAF+ RTNEPP I VH
Subjt:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH

Query:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEFL
        KIVDLS  P REAMWYLEVMEAYKMFYEPLVEEFL
Subjt:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEFL

XP_022152884.1 recQ-mediated genome instability protein 2 isoform X1 [Momordica charantia]4.2e-6085.19Show/hide
Query:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH
        MDYSLAALK++C QL  AR TPS + ATLGGILFQR WLQGILVSVD HNA+ +LDDGTGTVELSLSRDFRLR WNLGMYVMVVGAFV+R NEPPIIGVH
Subjt:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH

Query:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEFL
        KIVDLS FP REAMWYLEVMEAYKMFYEPL+EEFL
Subjt:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEFL

XP_022964663.1 uncharacterized protein LOC111464675 isoform X1 [Cucurbita moschata]8.7e-5885.82Show/hide
Query:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH
        MDYSLAALKL+C QL DARQ PSNN ATLGGILFQR WLQGILV VD  N K ILDDGTGTVELSLS DFR R W+LGMYVMVVGA+VVRTNEP II VH
Subjt:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH

Query:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF
        KIVDLS FPGREAMWYLEVMEAYKMFYEPLVEEF
Subjt:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF

XP_022970350.1 uncharacterized protein LOC111469342 [Cucurbita maxima]1.1e-5785.07Show/hide
Query:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH
        MDY+LAALKL+C QL DARQ PSNN ATLGGILFQR WLQGILV VD  N K ILDDGTGTVELSLS DFR R W+LGMYVMVVGA+VVRTNEP II VH
Subjt:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH

Query:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF
        KIVDLS FPGREAMWYLEVMEAYKMFYEPLVEEF
Subjt:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF

XP_038894076.1 uncharacterized protein LOC120082820 [Benincasa hispida]4.6e-5985.82Show/hide
Query:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH
        MDYSLAALKL+C QLKDARQ+P+NN ATLGGILFQR WLQG LVSVD  NAK ILDDGTGTVELSLSRDFRLR W LGMYVMVVGAFV RTNEPP+I VH
Subjt:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH

Query:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF
        KIVDLS FP REAMWYLEV+EAYKMFYEPL+EEF
Subjt:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF

TrEMBL top hitse value%identityAlignment
A0A1S3CGI5 recQ-mediated genome instability protein 25.2e-5682.96Show/hide
Query:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH
        MDYSLAALKL+C QLKDAR TPS+ TATL GILFQR WLQGILVSVD  N K ILDDGTGTVELSL R+F LR W+LGMYVMVVGAF+ RTNEPP I VH
Subjt:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH

Query:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEFL
        KIVDLS  P REAMWYLEVMEAYKMFYEPLVEEFL
Subjt:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEFL

A0A5A7UD07 RecQ-mediated genome instability protein 25.2e-5682.96Show/hide
Query:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH
        MDYSLAALKL+C QLKDAR TPS+ TATL GILFQR WLQGILVSVD  N K ILDDGTGTVELSL R+F LR W+LGMYVMVVGAF+ RTNEPP I VH
Subjt:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH

Query:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEFL
        KIVDLS  P REAMWYLEVMEAYKMFYEPLVEEFL
Subjt:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEFL

A0A6J1DF83 recQ-mediated genome instability protein 2 isoform X12.0e-6085.19Show/hide
Query:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH
        MDYSLAALK++C QL  AR TPS + ATLGGILFQR WLQGILVSVD HNA+ +LDDGTGTVELSLSRDFRLR WNLGMYVMVVGAFV+R NEPPIIGVH
Subjt:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH

Query:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEFL
        KIVDLS FP REAMWYLEVMEAYKMFYEPL+EEFL
Subjt:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEFL

A0A6J1HLJ4 uncharacterized protein LOC111464675 isoform X14.2e-5885.82Show/hide
Query:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH
        MDYSLAALKL+C QL DARQ PSNN ATLGGILFQR WLQGILV VD  N K ILDDGTGTVELSLS DFR R W+LGMYVMVVGA+VVRTNEP II VH
Subjt:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH

Query:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF
        KIVDLS FPGREAMWYLEVMEAYKMFYEPLVEEF
Subjt:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF

A0A6J1I0C8 uncharacterized protein LOC1114693425.5e-5885.07Show/hide
Query:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH
        MDY+LAALKL+C QL DARQ PSNN ATLGGILFQR WLQGILV VD  N K ILDDGTGTVELSLS DFR R W+LGMYVMVVGA+VVRTNEP II VH
Subjt:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVH

Query:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF
        KIVDLS FPGREAMWYLEVMEAYKMFYEPLVEEF
Subjt:  KIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF

SwissProt top hitse value%identityAlignment
A5PJU7 RecQ-mediated genome instability protein 27.5e-0432.03Show/hide
Query:  LKLVCGQL-KDARQTPSN---NTATLG--GILFQRVWLQGILVSVDNHNAKCILDDGTGTVEL-SLSRDFRLRTWNL-GMYVMVVGAFVVRTNEPPIIGV
        +K++  QL +DA   P +   + A +G   +  + VW+QG +V      A+  L D +G+  +  L R  R R   + G YVMV+G     + EP +  V
Subjt:  LKLVCGQL-KDARQTPSN---NTATLG--GILFQRVWLQGILVSVDNHNAKCILDDGTGTVEL-SLSRDFRLRTWNL-GMYVMVVGAFVVRTNEPPIIGV

Query:  HKIVDLSNFPGREAMWYLEVMEAYKMFY
         K+ DLS+ P  E++W LEV + ++  Y
Subjt:  HKIVDLSNFPGREAMWYLEVMEAYKMFY

Q3UPE3 RecQ-mediated genome instability protein 28.9e-0533.59Show/hide
Query:  LAALKLVCGQL-KDARQTPSN---NTATLGGILFQ--RVWLQGILVSVDNHNAKCILDDGTGTVEL-SLSRDFRLRTWNL-GMYVMVVGAFVVRTNEPPI
        L  LK++ GQL + A   P     + A +G    +   VW+QG +++ +   A+  L D +G   +  L R  R R   L G YVMV+G     + EP +
Subjt:  LAALKLVCGQL-KDARQTPSN---NTATLGGILFQ--RVWLQGILVSVDNHNAKCILDDGTGTVEL-SLSRDFRLRTWNL-GMYVMVVGAFVVRTNEPPI

Query:  IGVHKIVDLSNFPGREAMWYLEVMEAYK
          V K+ DLS+ P  E+MW LEV + ++
Subjt:  IGVHKIVDLSNFPGREAMWYLEVMEAYK

Q5ZM20 RecQ-mediated genome instability protein 27.5e-0434.69Show/hide
Query:  ILFQRVWLQGILVSVD-NHNAKCILDDGTGTVELSLSRDF-RLR-TWNLGMYVMVVGAFVVRTNEP-PIIGVHKIVDLSNFPGREAMWYLEVMEAYKM
        +  + VW+QG ++ V+        L DG+G   +    D  R R   + G YVMV+G  +VR   P P++   K+ DLS  P  E MW LEV E +++
Subjt:  ILFQRVWLQGILVSVD-NHNAKCILDDGTGTVELSLSRDF-RLR-TWNLGMYVMVVGAFVVRTNEP-PIIGVHKIVDLSNFPGREAMWYLEVMEAYKM

Q96E14 RecQ-mediated genome instability protein 25.2e-0535.2Show/hide
Query:  LKLVCGQL-KDARQTP-----SNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVEL-SLSRDFRLRTWNL-GMYVMVVGAFVVRTNEPPIIGV
        LK++  QL +DA   P     S   A  G +    VW+QG +V  D   A+  L D +G   +  L R  R R   + G YVMV+G     + EP +  V
Subjt:  LKLVCGQL-KDARQTP-----SNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVEL-SLSRDFRLRTWNL-GMYVMVVGAFVVRTNEPPIIGV

Query:  HKIVDLSNFPGREAMWYLEVMEAYK
         K+ DLS+ P  E+MW LEV + ++
Subjt:  HKIVDLSNFPGREAMWYLEVMEAYK

Arabidopsis top hitse value%identityAlignment
AT1G08390.1 unknown protein2.8e-4661.76Show/hide
Query:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAK--CILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIG
        MDYSLAA+K++C QL+DA+ TPS N A+LGG+LFQR WLQG+LV           +LDDGTG +EL L+ DF LR W  GMYVMVVG + VRT + P++ 
Subjt:  MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAK--CILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIG

Query:  VHKIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF
        VHK+VDLS  P REAMWYLEVM+AY++FYEPL++EF
Subjt:  VHKIVDLSNFPGREAMWYLEVMEAYKMFYEPLVEEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTACAGCTTAGCAGCGTTGAAGCTTGTGTGCGGGCAGCTGAAAGACGCCCGCCAAACTCCGTCCAACAACACCGCCACTCTCGGCGGCATTCTCTTCCAACGCGT
CTGGCTTCAGGGGATTTTGGTCTCCGTCGACAACCACAATGCTAAATGCATTCTCGACGACGGCACCGGCACCGTCGAGCTCTCTCTCTCTCGCGACTTTCGTCTCCGCA
CTTGGAACCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACCAATGAACCGCCGATTATTGGGGTGCACAAGATTGTTGATCTTTCAAACTTTCCTGGT
CGAGAGGCGATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGAACCTCTGGTGGAAGAATTTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATTAAAAATAAGACTTTGGGGACAAAAGTTGGAGGGAGTGAAGAGAGGGAGAGAGAAATGGACTACAGCTTAGCAGCGTTGAAGCTTGTGTGCGGGCAGCTGAAAGACGC
CCGCCAAACTCCGTCCAACAACACCGCCACTCTCGGCGGCATTCTCTTCCAACGCGTCTGGCTTCAGGGGATTTTGGTCTCCGTCGACAACCACAATGCTAAATGCATTC
TCGACGACGGCACCGGCACCGTCGAGCTCTCTCTCTCTCGCGACTTTCGTCTCCGCACTTGGAACCTCGGGATGTATGTGATGGTTGTTGGCGCTTTTGTCGTCCGGACC
AATGAACCGCCGATTATTGGGGTGCACAAGATTGTTGATCTTTCAAACTTTCCTGGTCGAGAGGCGATGTGGTACCTTGAAGTCATGGAAGCATACAAAATGTTCTATGA
ACCTCTGGTGGAAGAATTTTTATAAATCTTTCTGTTGACTTGACAGGTGATGTTTATTGAATTTGTCATGTTAATCTTGTTAAGCTAAGCAAAATGCTTCAATTTGTTGA
AGCCCACAGAAGGGTTTTTCTTTTATTAGTAATTATTTATAAAATTCAGTTGAAATTCAACTTATGTATTGTTATGATCATCTTTATTGATTTAGTAAGATCAAATCTCT
AACTTAGAGAATCAGAGTATACCCTTTCCCTTGGTAGGCACAACTGAGAAAATATAAATAGGTAAGGATAGAAAGACTAAGAGAGCCAATTCTATTCCTCAGTCTGTCTT
TGATGATGCCAAAATAGACTTTACC
Protein sequenceShow/hide protein sequence
MDYSLAALKLVCGQLKDARQTPSNNTATLGGILFQRVWLQGILVSVDNHNAKCILDDGTGTVELSLSRDFRLRTWNLGMYVMVVGAFVVRTNEPPIIGVHKIVDLSNFPG
REAMWYLEVMEAYKMFYEPLVEEFL