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Tan0013098 (gene) of Snake gourd v1 genome

Gene IDTan0013098
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionBeta-galactosidase
Genome locationLG03:67800759..67820054
RNA-Seq ExpressionTan0013098
SyntenyTan0013098
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0048046 - apoplast (cellular component)
GO:0004565 - beta-galactosidase activity (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
InterPro domainsIPR001944 - Glycoside hydrolase, family 35
IPR017853 - Glycoside hydrolase superfamily
IPR031330 - Glycoside hydrolase 35, catalytic domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588288.1 Beta-galactosidase 7, partial [Cucurbita argyrosperma subsp. sororia]4.4e-09100Show/hide
Query:  MYHGGTNFGRTSGGPYITTSYDYNAPLDEYG
        MYHGGTNFGRTSGGPYITTSYDYNAPLDEYG
Subjt:  MYHGGTNFGRTSGGPYITTSYDYNAPLDEYG

KAG6588288.1 Beta-galactosidase 7, partial [Cucurbita argyrosperma subsp. sororia]2.3e-1881.36Show/hide
Query:  LDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS
        LD D++ TTRVKKVCA P+AGSTLELSCHDRTI DINFV FG+P GTCDNFQKGSC+SS
Subjt:  LDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS

KGN48220.1 hypothetical protein Csa_003787 [Cucumis sativus]2.3e-2663.73Show/hide
Query:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFSTYLHLDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCD
        MQNYYMYHGGTNFGRTS                  G F  Y  +       TRVKKVCAKP+AGSTLELSCHDRTIKDI+FV FG+PRG CDNFQKG+CD
Subjt:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFSTYLHLDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCD

Query:  SS
        SS
Subjt:  SS

XP_016902878.1 PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis melo]5.2e-1886.27Show/hide
Query:  TRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS
        TRVKKVCAKP+AGSTLELSCHDRTIK+INFV FG+P G CDNFQKG+CDSS
Subjt:  TRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS

XP_016902878.1 PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis melo]8.0e-1184.62Show/hide
Query:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS
        +QNYYMYHGGTNFGRTSGGPYI T YDYNAPLDEYG  +
Subjt:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS

XP_038882297.1 beta-galactosidase 15-like [Benincasa hispida]2.5e-2084.75Show/hide
Query:  LDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS
        LD D++ TTRVKKVCAKP+AGSTLELSCHDRTIK+INFV FG+PRGTCDNFQKG+CDSS
Subjt:  LDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS

XP_038882297.1 beta-galactosidase 15-like [Benincasa hispida]1.5e-1292.31Show/hide
Query:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS
        MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG  +
Subjt:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS

XP_038882297.1 beta-galactosidase 15-like [Benincasa hispida]1.8e-1879.66Show/hide
Query:  LDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS
        LD D++ TTRV+KVCA P+AGSTLELSCHDRTI DINFV FG+P GTCDNFQKGSC+SS
Subjt:  LDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS

TrEMBL top hitse value%identityAlignment
A0A0A0KET4 Beta-galactosidase1.1e-2663.73Show/hide
Query:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFSTYLHLDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCD
        MQNYYMYHGGTNFGRTS                  G F  Y  +       TRVKKVCAKP+AGSTLELSCHDRTIKDI+FV FG+PRG CDNFQKG+CD
Subjt:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFSTYLHLDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCD

Query:  SS
        SS
Subjt:  SS

A0A1S4E3S3 Beta-galactosidase3.9e-1184.62Show/hide
Query:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS
        +QNYYMYHGGTNFGRTSGGPYI T YDYNAPLDEYG  +
Subjt:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS

A0A5A7SI46 Beta-galactosidase-like2.5e-1886.27Show/hide
Query:  TRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS
        TRVKKVCAKP+AGSTLELSCHDRTIK+INFV FG+P G CDNFQKG+CDSS
Subjt:  TRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS

A0A5D3C7Z1 Beta-galactosidase-like2.5e-1886.27Show/hide
Query:  TRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS
        TRVKKVCAKP+AGSTLELSCHDRTIK+INFV FG+P G CDNFQKG+CDSS
Subjt:  TRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS

A0A6J1CRE5 Beta-galactosidase2.5e-1877.97Show/hide
Query:  LDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS
        LD D++ TTRV+KVCAKP+ GSTLELSCHDRTI DI FV FG+PRG+C+NFQKGSCDSS
Subjt:  LDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS

A0A6J1CRE5 Beta-galactosidase2.0e-1297.22Show/hide
Query:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG
        +QNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG
Subjt:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG

A0A6J1CRE5 Beta-galactosidase2.5e-1886.27Show/hide
Query:  TRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS
        TRVKKVCAKP+AGSTLELSCHDRTIK+INFV FG+P G CDNFQKG+CDSS
Subjt:  TRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSS

SwissProt top hitse value%identityAlignment
P49676 Beta-galactosidase2.3e-1384.21Show/hide
Query:  QNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS
        QNYYMYHGGTNFGR +GGPYITTSYDY+APLDEYG  +
Subjt:  QNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS

Q10RB4 Beta-galactosidase 52.3e-1364.41Show/hide
Query:  NYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFSTYLHLDHDLKYTTRVKKVCAKP
        NYYMYHGGTNFGRT+GGP+ITTSYDY+APLDEYG  +      H LK   R  K+C +P
Subjt:  NYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFSTYLHLDHDLKYTTRVKKVCAKP

Q7G3T8 Beta-galactosidase 132.1e-1494.44Show/hide
Query:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG
        +QNYYMYHGGTNFGRTSGGPYITTSYDY+APLDEYG
Subjt:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG

Q7XFK2 Beta-galactosidase 144.7e-1491.67Show/hide
Query:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG
        +QNYYMYHGGTNFGRT+GGPYITTSYDY+APLDEYG
Subjt:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG

Q8RUV9 Beta-galactosidase 12.1e-1494.44Show/hide
Query:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG
        +QNYYMYHGGTNFGRTSGGPYITTSYDY+APLDEYG
Subjt:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG

Arabidopsis top hitse value%identityAlignment
AT1G45130.1 beta-galactosidase 58.2e-1457.81Show/hide
Query:  NYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS--TYLHLD--HDLKYTTRVKKVCAKPH
        NYYMYHGGTNFGRT+GGP+ITTSYDY+AP+DEYG      Y HL   H          V + PH
Subjt:  NYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS--TYLHLD--HDLKYTTRVKKVCAKPH

AT4G36360.1 beta-galactosidase 34.8e-1461.67Show/hide
Query:  NYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTF--STYLHLDHDLKYTTRVKKVCAK
        NYYMYHGGTNFGRT+GGP++TTSYDY+AP+DEYG      Y H    LK   R  K+C K
Subjt:  NYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTF--STYLHLDHDLKYTTRVKKVCAK

AT4G36360.2 beta-galactosidase 34.8e-1461.67Show/hide
Query:  NYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTF--STYLHLDHDLKYTTRVKKVCAK
        NYYMYHGGTNFGRT+GGP++TTSYDY+AP+DEYG      Y H    LK   R  K+C K
Subjt:  NYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTF--STYLHLDHDLKYTTRVKKVCAK

AT5G20710.1 beta-galactosidase 74.8e-1481.58Show/hide
Query:  QNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS
        QNYYMYHGGTNFGR +GGPYITTSYDY+APLDE+G  +
Subjt:  QNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFS

AT5G20710.1 beta-galactosidase 78.8e-0844.9Show/hide
Query:  TTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSC
        T  V  VCA+ H  + +ELSCH+R I  + F  FG+P G C +F  G+C
Subjt:  TTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSC

AT5G63810.1 beta-galactosidase 104.8e-1486.11Show/hide
Query:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG
        + NYYMYHGGTNFGRTSGGP+ITTSYDY AP+DEYG
Subjt:  MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAATTACTACATGTATCATGGTGGAACAAACTTTGGTAGAACTTCTGGAGGACCTTACATCACCACATCTTATGACTACAATGCACCCCTAGATGAATATGGTAC
CTTTTCAACTTATTTACATCTGGATCATGATTTAAAATATACAACGAGGGTGAAAAAGGTGTGTGCAAAGCCTCACGCAGGAAGCACATTGGAGCTATCATGCCATGATC
GAACCATCAAAGACATCAATTTTGTGGGCTTTGGGGACCCTCGTGGCACCTGTGACAATTTCCAGAAGGGTTCCTGTGATTCCTCTATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAATTACTACATGTATCATGGTGGAACAAACTTTGGTAGAACTTCTGGAGGACCTTACATCACCACATCTTATGACTACAATGCACCCCTAGATGAATATGGTAC
CTTTTCAACTTATTTACATCTGGATCATGATTTAAAATATACAACGAGGGTGAAAAAGGTGTGTGCAAAGCCTCACGCAGGAAGCACATTGGAGCTATCATGCCATGATC
GAACCATCAAAGACATCAATTTTGTGGGCTTTGGGGACCCTCGTGGCACCTGTGACAATTTCCAGAAGGGTTCCTGTGATTCCTCTATTTAG
Protein sequenceShow/hide protein sequence
MQNYYMYHGGTNFGRTSGGPYITTSYDYNAPLDEYGTFSTYLHLDHDLKYTTRVKKVCAKPHAGSTLELSCHDRTIKDINFVGFGDPRGTCDNFQKGSCDSSI