; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0013116 (gene) of Snake gourd v1 genome

Gene IDTan0013116
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGag/pol protein
Genome locationLG11:26507584..26507895
RNA-Seq ExpressionTan0013116
SyntenyTan0013116
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143540.1 uncharacterized protein LOC111013417 [Momordica charantia]3.7e-2465.85Show/hide
Query:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
        +DDL+FVLTEECPQ  ++N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTAKEIMDS++ MFG+ S+  +H A
Subjt:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
XP_022152352.1 uncharacterized protein LOC111020095 [Momordica charantia]4.8e-2460Show/hide
Query:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA-SSIYSTR----GCQRVH
        +DDLKFVL E+CPQ S+ N T  +R AYDRWIKANDKAKVY+LAS+ D+LAKKHE  +TAKEIMDS+Q MFGQ S++A+H A   IY++R       R H
Subjt:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA-SSIYSTR----GCQRVH

Query:  LFGIM
        +  +M
Subjt:  LFGIM
XP_022157095.1 uncharacterized protein LOC111023904 [Momordica charantia]1.1e-2365.85Show/hide
Query:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
        +DDL+FVLTEECPQ  + N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTAKEIMDS++ MFG+ S+  +H A
Subjt:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
XP_022157632.1 uncharacterized protein LOC111024294 [Momordica charantia]6.3e-2465.85Show/hide
Query:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
        +DDL+FVLTEECPQ  + N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTAKEIMDS++ MFG+ S+  +H A
Subjt:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
XP_022157844.1 uncharacterized protein LOC111024457 [Momordica charantia]3.7e-2465.85Show/hide
Query:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
        +DDL+FVLTEECPQ  ++N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTAKEIMDS++ MFG+ S+  +H A
Subjt:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
TrEMBL top hitse value%identityAlignment
A0A6J1CP29 uncharacterized protein LOC1110134171.8e-2465.85Show/hide
Query:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
        +DDL+FVLTEECPQ  ++N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTAKEIMDS++ MFG+ S+  +H A
Subjt:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
A0A6J1DFZ2 uncharacterized protein LOC1110200952.3e-2460Show/hide
Query:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA-SSIYSTR----GCQRVH
        +DDLKFVL E+CPQ S+ N T  +R AYDRWIKANDKAKVY+LAS+ D+LAKKHE  +TAKEIMDS+Q MFGQ S++A+H A   IY++R       R H
Subjt:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA-SSIYSTR----GCQRVH

Query:  LFGIM
        +  +M
Subjt:  LFGIM
A0A6J1DS54 uncharacterized protein LOC1110239045.2e-2465.85Show/hide
Query:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
        +DDL+FVLTEECPQ  + N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTAKEIMDS++ MFG+ S+  +H A
Subjt:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
A0A6J1DUZ9 uncharacterized protein LOC1110242943.0e-2465.85Show/hide
Query:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
        +DDL+FVLTEECPQ  + N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTAKEIMDS++ MFG+ S+  +H A
Subjt:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
A0A6J1DXQ5 uncharacterized protein LOC1110244571.8e-2465.85Show/hide
Query:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
        +DDL+FVLTEECPQ  ++N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTAKEIMDS++ MFG+ S+  +H A
Subjt:  MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATCTCAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGTGTCAAGCTCGAATATTACACGAAATATTCGAGATGCATATGATCGATGGATCAAGGCCAATGATAA
GGCCAAGGTCTATATGCTGGCAAGTATGTTTGACATATTAGCAAAGAAGCACGAGGGCATGATGACCGCTAAGGAAATCATGGATTCAGTGCAGGGTATGTTTGGACAAC
AGTCTACAGAGGCCCAACACAATGCCTCAAGTATATATTCAACTCGAGGATGCCAGAGGGTTCATCTGTTCGGGATCATGTCCCTGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGATCTCAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGTGTCAAGCTCGAATATTACACGAAATATTCGAGATGCATATGATCGATGGATCAAGGCCAATGATAA
GGCCAAGGTCTATATGCTGGCAAGTATGTTTGACATATTAGCAAAGAAGCACGAGGGCATGATGACCGCTAAGGAAATCATGGATTCAGTGCAGGGTATGTTTGGACAAC
AGTCTACAGAGGCCCAACACAATGCCTCAAGTATATATTCAACTCGAGGATGCCAGAGGGTTCATCTGTTCGGGATCATGTCCCTGATATGA
Protein sequenceShow/hide protein sequence
MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNASSIYSTRGCQRVHLFGIMSLI