; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0013122 (gene) of Snake gourd v1 genome

Gene IDTan0013122
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationLG07:73020990..73024088
RNA-Seq ExpressionTan0013122
SyntenyTan0013122
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007529 - Zinc finger, HIT-type
IPR040197 - Zinc finger HIT domain-containing protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7036274.1 Zinc finger HIT domain-containing protein 3 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-5786.36Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKP+SA DQS  PNGS VDRP+FVGDQNEVLEK+QLEAIASSSEI N+LNDE+LR LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI

Query:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS
        DSSPDPE EL KAMEDEAFRI S KI+SIIGS
Subjt:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS

XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]6.5e-5888.64Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI
        MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKP+SA DQST PNGSLVDRPI V DQ+EVLEKSQLEAIASSSEI N+LNDE L+KLI AI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI

Query:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS
         SSPDPETEL +AMEDEAFRIFSSKI+SIIGS
Subjt:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS

XP_022931150.1 zinc finger HIT domain-containing protein 3 [Cucurbita moschata]3.2e-5785.61Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKP+SA DQS  PNGS VDRP+FVGDQNEVLEK+QLEAIASSSEI N+LNDE+LR LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI

Query:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS
        DSSPDPE EL KAMEDEAFRI S KI+SI+GS
Subjt:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS

XP_022995777.1 zinc finger HIT domain-containing protein 3 [Cucurbita maxima]5.0e-5887.12Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKP+SA DQS  PNGS VDRP+FVGDQNEVLEK+QLEAIASSSEI N+LNDE+LR LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI

Query:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS
        DSSPDPE EL KAMEDEAFRI SSKI+SIIGS
Subjt:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS

XP_023533050.1 zinc finger HIT domain-containing protein 3 [Cucurbita pepo subsp. pepo]6.5e-5886.36Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKP+SA DQS  PNGS VDRP+FVGDQNEVLEK+QLEAIASSSE+ N+LNDE+LR LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI

Query:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS
        DSSPDPE EL KAMEDEAFRI SSKI+SIIGS
Subjt:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS

TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein3.3e-5584.21Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KP+S  DQST  NG+ VDRPI VGDQNEVLEKSQLEAIASSSEIHN LNDE+L+K I A
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYA

Query:  IDSSPDPETELVKAMEDEAFRIFSSKITSIIGS
        IDSSPDPETE+ KAMEDEAFRIFSSKI+SII S
Subjt:  IDSSPDPETELVKAMEDEAFRIFSSKITSIIGS

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X11.3e-5686.47Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYA
        M PR+CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC +KP+S  DQST PNGS VDRPI VGDQNEVLEKSQLEAIASSSEIHN LNDE+LRK I A
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPC-VKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYA

Query:  IDSSPDPETELVKAMEDEAFRIFSSKITSIIGS
        IDSS DPETEL KAMEDEAFRIFSSKI+SII S
Subjt:  IDSSPDPETELVKAMEDEAFRIFSSKITSIIGS

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X13.2e-5888.64Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI
        MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKP+SA DQST PNGSLVDRPI V DQ+EVLEKSQLEAIASSSEI N+LNDE L+KLI AI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI

Query:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS
         SSPDPETEL +AMEDEAFRIFSSKI+SIIGS
Subjt:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS

A0A6J1ESW0 zinc finger HIT domain-containing protein 31.6e-5785.61Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKP+SA DQS  PNGS VDRP+FVGDQNEVLEK+QLEAIASSSEI N+LNDE+LR LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI

Query:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS
        DSSPDPE EL KAMEDEAFRI S KI+SI+GS
Subjt:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS

A0A6J1JZX2 zinc finger HIT domain-containing protein 32.4e-5887.12Show/hide
Query:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI
        MGPRQCQVCNEAPSKYKCPLCL PYCSLVCFKKHKEVPCVKP+SA DQS  PNGS VDRP+FVGDQNEVLEK+QLEAIASSSEI N+LNDE+LR LI AI
Subjt:  MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAI

Query:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS
        DSSPDPE EL KAMEDEAFRI SSKI+SIIGS
Subjt:  DSSPDPETELVKAMEDEAFRIFSSKITSIIGS

SwissProt top hitse value%identityAlignment
Q15649 Zinc finger HIT domain-containing protein 31.9e-0727.14Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVL-------------EKSQLEAIASSSEIHNSLND
        C +C E P KY+CP C  PYCS+VCF+KHKE   P  +P+    +S  P  ++  +P+   D ++ +                 L+ +  S+ + + L +
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVL-------------EKSQLEAIASSSEIHNSLND

Query:  ERLRKLIYAIDSSPDPETELVKAMEDEAFRIFSSKITSII
          LR+L+  +D   D    +   M++  F  F+     I+
Subjt:  ERLRKLIYAIDSSPDPETELVKAMEDEAFRIFSSKITSII

Q2KIH1 Zinc finger HIT domain-containing protein 31.8e-0559.46Show/hide
Query:  GPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVP
        G   C VC E P KY+CP C  PYCSL CF+KHK  P
Subjt:  GPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVP

Q6UIM1 Zinc finger HIT domain-containing protein 3 (Fragment)9.3e-0726.62Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPISAVDQSTTP------------NGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDE
        C +C E P KY+CP C  PYCS+ CF+KHKE   P  +P+    +S  P            + S+ D  +   ++ + +    L+ +  S+ + + L + 
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV--PCVKPISAVDQSTTP------------NGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDE

Query:  RLRKLIYAIDSSPDPETELVKAMEDEAFRIFSSKITSII
         LR+L+  +D   D    +   M++  F  F+     I+
Subjt:  RLRKLIYAIDSSPDPETELVKAMEDEAFRIFSSKITSII

Q6UIM2 Zinc finger HIT domain-containing protein 3 (Fragment)2.3e-0525.19Show/hide
Query:  KYKCPLCLAPYCSLVCFKKHKEV--PCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVL-------------EKSQLEAIASSSEIHNSLNDERLRKLIYA
        KY+CP C  PYCS+ CF+KHKE   P  +P+    +S  P  ++  +P+   D ++ +                 L+ +  S+ + + L +  LR+L+  
Subjt:  KYKCPLCLAPYCSLVCFKKHKEV--PCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVL-------------EKSQLEAIASSSEIHNSLNDERLRKLIYA

Query:  IDSSPDPETELVKAMEDEAFRIFSSKITSII
        +D   D    +   M++  F  F+     I+
Subjt:  IDSSPDPETELVKAMEDEAFRIFSSKITSII

Q9CQK1 Zinc finger HIT domain-containing protein 33.5e-0629.41Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV------PCVK----PISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRK
        C VC E P KY+CP C  PYCS+ CF+KHKE       P  K    P    ++S   + S+ D  +   ++ + +    L+ +  S  + + L +  LR+
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEV------PCVK----PISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRK

Query:  LIYAIDSSPDPETELVKA-MEDEAFRIFSSKITSII
        L+ ++D   D + +L++A M++  F  F+     I+
Subjt:  LIYAIDSSPDPETELVKA-MEDEAFRIFSSKITSII

Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein1.7e-2744.94Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGS---------------------------------LVDRPIFVGDQNEVLEK
        C++C +  SKYKCP CL PYCSL CFK HKE PC KP         P  S                                  V RPI V ++  +LEK
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGS---------------------------------LVDRPIFVGDQNEVLEK

Query:  SQLEAIASSSEIHNSLNDERLRKLIYAIDSSPDPETELVKAMEDEAFRIFSSKITSII
        +Q EAIASSSEI  +L DE L+KLIY+IDSS +P  EL +AM  EAFR F+ KI S I
Subjt:  SQLEAIASSSEIHNSLNDERLRKLIYAIDSSPDPETELVKAMEDEAFRIFSSKITSII

AT4G28820.2 HIT-type Zinc finger family protein2.2e-2745.86Show/hide
Query:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKP------------------------ISAVDQSTTPNGSL--------VDRPIFVGDQNEVLEKS
        C++C +  SKYKCP CL PYCSL CFK HKE PC KP                         + V + T    S         V RPI V ++  +LEK+
Subjt:  CQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKP------------------------ISAVDQSTTPNGSL--------VDRPIFVGDQNEVLEKS

Query:  QLEAIASSSEIHNSLNDERLRKLIYAIDSSPDPETELVKAMEDEAFRIFSSKITSII
        Q EAIASSSEI  +L DE L+KLIY+IDSS +P  EL +AM  EAFR F+ KI S I
Subjt:  QLEAIASSSEIHNSLNDERLRKLIYAIDSSPDPETELVKAMEDEAFRIFSSKITSII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCTCTATGCCTTGCCCCTTACTGCTCTCTGGTTTGTTTCAAGAAACACAAAGAAGT
GCCCTGTGTTAAGCCTATTTCTGCAGTGGACCAATCAACTACTCCTAATGGATCACTTGTAGATAGGCCAATATTTGTTGGAGACCAGAATGAAGTACTTGAAAAGTCGC
AGCTAGAGGCAATTGCTTCTTCCTCAGAAATACACAATAGTTTGAATGATGAAAGACTCCGGAAGCTCATCTATGCCATTGATAGTTCACCAGATCCAGAAACTGAACTC
GTTAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGCAGCAAGATAACATCCATCATCGGCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATTTCTTTTGAGGTATTTCTGGTTTTGTCAAAACCCTCTCGTTGAACGGTGAAGGCAGGCGCCAAACTCGCGTTTGATTGAGCTGAGAACTCAACATTCTCTCCCTCCAC
ATTTGAGATTAAGAAATTGAACATTCTATGGGTCCTCGGCAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCTCTATGCCTTGCCCCTTACTGCTCTCT
GGTTTGTTTCAAGAAACACAAAGAAGTGCCCTGTGTTAAGCCTATTTCTGCAGTGGACCAATCAACTACTCCTAATGGATCACTTGTAGATAGGCCAATATTTGTTGGAG
ACCAGAATGAAGTACTTGAAAAGTCGCAGCTAGAGGCAATTGCTTCTTCCTCAGAAATACACAATAGTTTGAATGATGAAAGACTCCGGAAGCTCATCTATGCCATTGAT
AGTTCACCAGATCCAGAAACTGAACTCGTTAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGCAGCAAGATAACATCCATCATCGGCTCCTAGCCCCGGTGGTCACA
GATGGAGGGAAAAGATTGTCCAAGATATATATATATGTATGATCAATGGAACATTTCTGCCCCCTTGCCATAAGTGCTCGGCTCAGCAGATGCTGAAATCAAGGATGAGG
AAGCAACGGTTCACAGAATGAAGTATGCTGGGATTGACTATCCAAGAGCTCAGCTGCGATGTCTGATGGTGATAAATGTGCCAAGTTTAGCAATTTATATATGGCTCTCT
CTTTTTTTCCCCTCTCCCAGCAGACTCCTTTTAACGAACAACAACCAGTGATACAACTCTACATGGGAAAATGTCCCTTTGAGCTCGATCAATCAAACTCGTGTTTAATG
CTTTCTAGGCTTATTAGTTTGTAGGAAGACATGTTTTTGCCTAAATGATATCTTATTTATTTATTTTACTTAATTTATATTTCGACGTAAGGTGAAAATTCGAATA
Protein sequenceShow/hide protein sequence
MGPRQCQVCNEAPSKYKCPLCLAPYCSLVCFKKHKEVPCVKPISAVDQSTTPNGSLVDRPIFVGDQNEVLEKSQLEAIASSSEIHNSLNDERLRKLIYAIDSSPDPETEL
VKAMEDEAFRIFSSKITSIIGS