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Tan0013174 (gene) of Snake gourd v1 genome

Gene IDTan0013174
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG02:42777024..42777377
RNA-Seq ExpressionTan0013174
SyntenyTan0013174
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]1.1e-3776.27Show/hide
Query:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT
        MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTPVV+ +DKGKN++QE QP Q +  VASLSVQQLQDMI SSIRAQYGGP+Q  F YSK YT
Subjt:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.1e-3776.27Show/hide
Query:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT
        MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTPVV+ +DKGKN++QE QP Q +  VASLSVQQLQDMI SSIRAQYGGP+Q  F YSK YT
Subjt:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]1.1e-3776.27Show/hide
Query:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT
        MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTPVV+ +DKGKN++QE QP Q +  VASLSVQQLQDMI SSIRAQYGGP+Q  F YSK YT
Subjt:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.1e-3776.27Show/hide
Query:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT
        MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTPVV+ +DKGKN++QE QP Q +  VASLSVQQLQDMI SSIRAQYGGP+Q  F YSK YT
Subjt:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

XP_031744658.1 uncharacterized protein LOC116405107 [Cucumis sativus]1.1e-3776.27Show/hide
Query:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT
        MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTPVV+ +DKGKN++QE QP Q +  VASLSVQQLQDMI SSIRAQYGGP+Q  F YSK YT
Subjt:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

TrEMBL top hitse value%identityAlignment
A0A5A7TC87 Ty3-gypsy retrotransposon protein1.1e-3572.03Show/hide
Query:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT
        M EME+KIN LMK VEERD EIA LK Q++  E  ESS+TPVV+  DKGKN++QE QP Q ++ VASLSVQQLQDMI++SIRAQYGGP+Q  F YSK YT
Subjt:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

A0A5A7VCU1 Ty3-gypsy retrotransposon protein2.0e-3572.88Show/hide
Query:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT
        MAEMERKIN LMK VEERD EI  L+ Q+Q +E VESSQT VV+  DKGKN++QE QP Q ++ VASLSVQQLQ+MI +S RAQYGGP Q  F YSKSYT
Subjt:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.0e-3672.88Show/hide
Query:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT
        MAEMERKIN LMK VEERD EI  L+ Q++ +E  ESSQTP+V+  DKGKN++QE QP Q ++ VASLSVQQLQDMI +SIRAQYGGP Q  F YSKSYT
Subjt:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

A0A5D3BZH8 Ty3-gypsy retrotransposon protein6.7e-3674.58Show/hide
Query:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT
        MAEMERKIN LMK VEERD EIA LK Q++  E  ESSQTPVV+  DKGKN++QE QP Q ++ VASLSVQQLQDMI +SIRAQYGGP Q  F YSK YT
Subjt:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

A0A5D3DIN4 Ty3-gypsy retrotransposon protein1.1e-3572.03Show/hide
Query:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT
        M EME+KIN LMK VEERD EIA LK Q++  E  ESS+TPVV+  DKGKN++QE QP Q ++ VASLSVQQLQDMI++SIRAQYGGP+Q  F YSK YT
Subjt:  MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLAL-VASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYT

Query:  KRIDNLRMPAGYQPPKFQ
        KRIDNLRMP GYQPPKFQ
Subjt:  KRIDNLRMPAGYQPPKFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGAAGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAATGGTTGAATC
TAGCCAAACCCCTGTAGTAAGAAACAATGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCTCAACTAGCTTTAGTTGCTTCTTTATCCGTCCAACAACTACAGG
ACATGATCATGAGTTCTATCAGAGCTCAATATGGCGGACCCGCTCAAAATCCTTTCACATACTCTAAATCGTACACTAAGAGGATTGACAATTTGAGGATGCCCGCAGGA
TACCAACCTCCAAAGTTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGAAGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAATGGTTGAATC
TAGCCAAACCCCTGTAGTAAGAAACAATGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCTCAACTAGCTTTAGTTGCTTCTTTATCCGTCCAACAACTACAGG
ACATGATCATGAGTTCTATCAGAGCTCAATATGGCGGACCCGCTCAAAATCCTTTCACATACTCTAAATCGTACACTAAGAGGATTGACAATTTGAGGATGCCCGCAGGA
TACCAACCTCCAAAGTTCCAGTAG
Protein sequenceShow/hide protein sequence
MAEMERKINLLMKEVEERDLEIAYLKSQVQNKEMVESSQTPVVRNNDKGKNIIQEEQPPQLALVASLSVQQLQDMIMSSIRAQYGGPAQNPFTYSKSYTKRIDNLRMPAG
YQPPKFQ