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Tan0013183 (gene) of Snake gourd v1 genome

Gene IDTan0013183
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG04:68407676..68408194
RNA-Seq ExpressionTan0013183
SyntenyTan0013183
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033245.1 uncharacterized protein E6C27_scaffold845G00400 [Cucumis melo var. makuwa]5.9e-3458Show/hide
Query:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS
        LHQCFKFYQDG+KKVEAD+NPFSE ESHF  AKFYLK D+  EAVS+EV ++   D ++ +    K            K E S  T  S     EK  + 
Subjt:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS

Query:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
        PILRYVPLS+RKK ESPFVE  + LKVGDIEILKE F   LTKITKQE K
Subjt:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
KAA0033768.1 uncharacterized protein E6C27_scaffold142G00210 [Cucumis melo var. makuwa]2.9e-3356.67Show/hide
Query:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDKKKEVSE--------ETKMSNS-------EKVPSS
        LHQCFKFYQD +KKVEAD+NPFSEVESHFA AKFYLK DN  EAV VE+S++   + ++ +    ++   S         ET  S +       EK  + 
Subjt:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDKKKEVSE--------ETKMSNS-------EKVPSS

Query:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
        PILRYVPLS+RKK ESPFVE  + LKVGDIE+LKE+F   LTKITKQE K
Subjt:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
KAA0037793.1 uncharacterized protein E6C27_scaffold918G00010 [Cucumis melo var. makuwa]2.2e-3358Show/hide
Query:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS
        LHQCFKFYQDG+KKVEAD+NPFSE ESHFA AKFYLK D   EAVSVEV ++   D ++ +    K            K E S  T  S     EK  + 
Subjt:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS

Query:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
        PILRYVPLS+ KK ESPFVE  + LKVGDIE+LKE+F   LTKITKQE K
Subjt:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
KAA0051585.1 uncharacterized protein E6C27_scaffold174G001280 [Cucumis melo var. makuwa]2.9e-3357.33Show/hide
Query:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS
        LHQCFKFYQDG+KKVEAD+NPFSE ESHFA AKFYLK D+  E VSVEV ++   D ++ +    K            K E S  T  S     EK  + 
Subjt:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS

Query:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
        PILRYVPLS+RKK ESPFVE  + LKVG+IE+LKE+F   LTKITKQE K
Subjt:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
TYK02888.1 uncharacterized protein E5676_scaffold968G00270 [Cucumis melo var. makuwa]2.2e-3358.67Show/hide
Query:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS
        LHQCFKFYQDG+KKVEAD+NPFSE ESHFA AKFYLK D   EAVSVEV ++   D ++ +    K            K E S  T  S     EK  + 
Subjt:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS

Query:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
        PILRYVPLS+ KK ESPFVE  + LKVGDIEILKE F   LTKITKQE K
Subjt:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
TrEMBL top hitse value%identityAlignment
A0A5A7ST30 Uncharacterized protein1.4e-3356.67Show/hide
Query:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDKKKEVSE--------ETKMSNS-------EKVPSS
        LHQCFKFYQD +KKVEAD+NPFSEVESHFA AKFYLK DN  EAV VE+S++   + ++ +    ++   S         ET  S +       EK  + 
Subjt:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDKKKEVSE--------ETKMSNS-------EKVPSS

Query:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
        PILRYVPLS+RKK ESPFVE  + LKVGDIE+LKE+F   LTKITKQE K
Subjt:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
A0A5A7SVR4 Uncharacterized protein2.9e-3458Show/hide
Query:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS
        LHQCFKFYQDG+KKVEAD+NPFSE ESHF  AKFYLK D+  EAVS+EV ++   D ++ +    K            K E S  T  S     EK  + 
Subjt:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS

Query:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
        PILRYVPLS+RKK ESPFVE  + LKVGDIEILKE F   LTKITKQE K
Subjt:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
A0A5A7T485 Reverse transcriptase1.1e-3358Show/hide
Query:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS
        LHQCFKFYQDG+KKVEAD+NPFSE ESHFA AKFYLK D   EAVSVEV ++   D ++ +    K            K E S  T  S     EK  + 
Subjt:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS

Query:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
        PILRYVPLS+ KK ESPFVE  + LKVGDIE+LKE+F   LTKITKQE K
Subjt:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
A0A5A7UD46 Uncharacterized protein1.4e-3357.33Show/hide
Query:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS
        LHQCFKFYQDG+KKVEAD+NPFSE ESHFA AKFYLK D+  E VSVEV ++   D ++ +    K            K E S  T  S     EK  + 
Subjt:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS

Query:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
        PILRYVPLS+RKK ESPFVE  + LKVG+IE+LKE+F   LTKITKQE K
Subjt:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
A0A5D3BV77 Reverse transcriptase1.1e-3358.67Show/hide
Query:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS
        LHQCFKFYQDG+KKVEAD+NPFSE ESHFA AKFYLK D   EAVSVEV ++   D ++ +    K            K E S  T  S     EK  + 
Subjt:  LHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDK------------KKEVSEETKMS---NSEKVPSS

Query:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
        PILRYVPLS+ KK ESPFVE  + LKVGDIEILKE F   LTKITKQE K
Subjt:  PILRYVPLSQRKKDESPFVECSRNLKVGDIEILKENFIMLLTKITKQEAK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTACATCAATGCTTCAAATTTTACCAGGACGGCATCAAGAAAGTGGAAGCTGACACAAATCCATTTTCAGAGGTTGAGTCTCATTTTGCGGCCGCGAAGTTTTACTT
GAAGGGCGACAACATAGGGGAAGCTGTGTCGGTGGAAGTCTCCATGATCAAAGCCAACGATAAGATAAAACCAGAACTTTGTATTGATAAGAAAAAGGAAGTTAGCGAGG
AAACGAAGATGTCCAATTCTGAAAAAGTTCCAAGCTCTCCTATCTTGCGCTATGTTCCTCTATCTCAACGCAAGAAGGATGAGTCACCTTTTGTAGAATGTTCAAGAAAT
CTAAAAGTTGGTGATATAGAGATCCTAAAAGAAAACTTCATTATGCTTCTGACAAAGATAACAAAGCAAGAAGCTAAGAAACCTGATGATGAACAGGTAAAAACAATGTT
CCGAGAGACGAACGGAAGATGGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTACATCAATGCTTCAAATTTTACCAGGACGGCATCAAGAAAGTGGAAGCTGACACAAATCCATTTTCAGAGGTTGAGTCTCATTTTGCGGCCGCGAAGTTTTACTT
GAAGGGCGACAACATAGGGGAAGCTGTGTCGGTGGAAGTCTCCATGATCAAAGCCAACGATAAGATAAAACCAGAACTTTGTATTGATAAGAAAAAGGAAGTTAGCGAGG
AAACGAAGATGTCCAATTCTGAAAAAGTTCCAAGCTCTCCTATCTTGCGCTATGTTCCTCTATCTCAACGCAAGAAGGATGAGTCACCTTTTGTAGAATGTTCAAGAAAT
CTAAAAGTTGGTGATATAGAGATCCTAAAAGAAAACTTCATTATGCTTCTGACAAAGATAACAAAGCAAGAAGCTAAGAAACCTGATGATGAACAGGTAAAAACAATGTT
CCGAGAGACGAACGGAAGATGGATTTGA
Protein sequenceShow/hide protein sequence
MLHQCFKFYQDGIKKVEADTNPFSEVESHFAAAKFYLKGDNIGEAVSVEVSMIKANDKIKPELCIDKKKEVSEETKMSNSEKVPSSPILRYVPLSQRKKDESPFVECSRN
LKVGDIEILKENFIMLLTKITKQEAKKPDDEQVKTMFRETNGRWI