CuGenDBv2

Gene ID	Tan0013186
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S ribosomal protein L7a
Genome location	LG05:78209633..78210865
RNA-Seq Expression	Tan0013186
Synteny	Tan0013186
Gene Ontology terms	GO:0000470 - maturation of LSU-rRNA (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR029064 - 50S ribosomal protein L30e-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6579662.1 60S ribosomal protein L7a-2, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-47

74.17

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLFKMLLKYRP+DK+ KR           E KSHDAKK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         I
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DKMEFSRILEAIKANFNDKYDEY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

KAG7017114.1 60S ribosomal protein L7a-2, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-47

74.17

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLFKMLLKYRP+DK+ KR           E KSHDAKK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         I
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DKMEFSRILEAIKANFNDKYDEY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

XP_008467259.1 PREDICTED: 60S ribosomal protein L7a-2 [Cucumis melo]

2.4e-47

73.51

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLFKMLLKYRP+DK+ KR           E KSHDAKK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         +
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DKMEFSRILEAIKANFNDKYDEY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

XP_022970188.1 60S ribosomal protein L7a-2-like [Cucurbita maxima]

2.4e-47

73.51

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLFKMLLKYRP+DK+ KR           E KSHDAKK IV+K GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         I
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DKMEFSRILEAIKANFNDKYDEY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

XP_023551212.1 60S ribosomal protein L7a-2-like [Cucurbita pepo subsp. pepo]

1.8e-47

74.17

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLFKMLLKYRP+DK+ KR           E KSHDAKK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         I
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DKMEFSRILEAIKANFNDKYDEY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CUE8 60S ribosomal protein L7a

1.1e-47

73.51

Show/hide

Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLFKMLLKYRP+DK+ KR           E KSHDAKK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         +
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DKMEFSRILEAIKANFNDKYDEY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

A0A5D3DB00 60S ribosomal protein L7a

1.1e-47

73.51

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLFKMLLKYRP+DK+ KR           E KSHDAKK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         +
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DKMEFSRILEAIKANFNDKYDEY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

A0A6J1DV46 60S ribosomal protein L7a

2.0e-47

73.51

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLFKMLLKYRP+DK+ KR           E KSHDAKK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         I
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DK+EFSRILEAIKANFNDKYDEY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

A0A6J1EM71 60S ribosomal protein L7a

2.0e-47

73.51

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLF+MLLKYRP+DK+ KR           E KSHDAKK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         I
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DKMEFSRILEAIKANFNDKYDEY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

A0A6J1I354 60S ribosomal protein L7a

1.1e-47

73.51

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLFKMLLKYRP+DK+ KR           E KSHDAKK IV+K GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         I
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DKMEFSRILEAIKANFNDKYDEY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

SwissProt top hits

e value

%identity

Alignment

P0DKK7 60S ribosomal protein L7a-2

1.8e-45

68.21

Show/hide

Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLFKMLLKYRP+DK+ K+           E K+ +AKK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         I
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DK+EFS+ILEAIKANFNDK+DE +KKWGG +MGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

P35685 60S ribosomal protein L7a-1

1.8e-45

68.21

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        TNLFKMLLKYRP+DK+ K+           E K+ +AKK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         I
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VHKKTASVLCLTTV+N+DK+EFS+ILEAIKANFNDK+DE +KKWGG +MGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

P46223 60S ribosomal protein L7a

1.7e-24

45.16

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Query:  SSTTNLFKMLLKYRPKDKSHKR---------ESKSHDA---KKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCII-----
        ++   LFK+L KYRP+    K+         ++K  D    KK   V  G N VT LIE    QLVVIA+DVDP+ELV++L ALCRKM   YCI+     
Subjt:  SSTTNLFKMLLKYRPKDKSHKR---------ESKSHDA---KKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCII-----

Query:  ----VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
            V +KT + L LTTV N DK  F ++LEA+K NFN++++E ++ WGG I+GS
Subjt:  ----VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

P49692 60S ribosomal protein L7a-1

5.7e-44

65.56

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        T+LFK+LLKYRP+DK+ K+           E K  ++KK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         +
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VH+KTAS LCLTTV+N+DK+EFS+ILEAIKANFNDKY+EY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

Q9LZH9 60S ribosomal protein L7a-2

1.3e-43

64.9

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Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        T+LFK+LLKYRP+DK+ K+           E K  ++KK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         +
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VH+KTA+ LCLTTV+N+DK+EFS+ILEAIKANFNDKY+EY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

Arabidopsis top hits

e value

%identity

Alignment

AT2G47610.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

4.0e-45

65.56

Show/hide

Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        T+LFK+LLKYRP+DK+ K+           E K  ++KK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         +
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VH+KTAS LCLTTV+N+DK+EFS+ILEAIKANFNDKY+EY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

AT3G62870.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

9.0e-45

64.9

Show/hide

Query:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I
        T+LFK+LLKYRP+DK+ K+           E K  ++KK IVVK GLNHVTYLIE    QLVVIA+DVDPIELVVWL ALCRKM+  YCI         +
Subjt:  TNLFKMLLKYRPKDKSHKR-----------ESKSHDAKKLIVVKNGLNHVTYLIE----QLVVIAYDVDPIELVVWLRALCRKMKNSYCI---------I

Query:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS
        VH+KTA+ LCLTTV+N+DK+EFS+ILEAIKANFNDKY+EY+KKWGG IMGS
Subjt:  VHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCCCGTCATTATATGTCCGACCAAAAATTTCAGACGCGCCTTTCCTCTGTCCGTCATTGTTTCTCACCCCCTGATTTTCTTGTCCGTCATTATATCCCTATTTTCTTC
TACAACAAACTTGTTCAAGATGCTTTTGAAGTATAGGCCAAAGGATAAATCTCATAAAAGGGAGAGCAAATCACACGATGCCAAAAAGCTTATTGTTGTTAAGAATGGTC
TCAACCATGTTACCTACCTCATTGAGCAGTTGGTTGTGATTGCGTATGATGTAGATCCGATCGAGTTGGTTGTTTGGCTCCGTGCTCTGTGCAGGAAGATGAAAAATTCA
TATTGCATTATTGTTCACAAAAAGACTGCATCCGTTTTGTGCTTGACAACCGTACAAAACAAAGATAAAATGGAGTTTAGCAGGATCCTTGAAGCTATTAAGGCAAATTT
CAATGACAAGTACGATGAGTACAAAAAGAAATGGGGTGGCGAGATCATGGGTTCCAGCTTTAAGTTTTATTGGATTGACACTTTTTAG

mRNA sequence

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Protein sequence

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MPVIICPTKNFRRAFPLSVIVSHPLIFLSVIISLFSSTTNLFKMLLKYRPKDKSHKRESKSHDAKKLIVVKNGLNHVTYLIEQLVVIAYDVDPIELVVWLRALCRKMKNS
YCIIVHKKTASVLCLTTVQNKDKMEFSRILEAIKANFNDKYDEYKKKWGGEIMGSSFKFYWIDTF

Tan0013186 (gene) of Snake gourd v1 genome