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Tan0013187 (gene) of Snake gourd v1 genome

Gene IDTan0013187
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionauxin-induced in root cultures protein 12-like
Genome locationLG01:71667387..71667834
RNA-Seq ExpressionTan0013187
SyntenyTan0013187
Gene Ontology termsNA
InterPro domainsIPR008801 - Rapid ALkalinization Factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650705.1 hypothetical protein Csa_010421 [Cucumis sativus]1.7e-0846.99Show/hide
Query:  MAIIKGSTLIFVGILFVCIDTIEITNA-NYIEYGPL-KGDISPG-------------LNPYQRGCSAIDRCRGGSNVIDGDEK
        M + K  TL+F+GIL V  D I ITNA  +I+YG +  GD+SPG              NPYQRGC+ IDRCR G+++ID +E+
Subjt:  MAIIKGSTLIFVGILFVCIDTIEITNA-NYIEYGPL-KGDISPG-------------LNPYQRGCSAIDRCRGGSNVIDGDEK

XP_022136918.1 uncharacterized protein LOC111008495 [Momordica charantia]7.2e-1240.38Show/hide
Query:  KGSTLIFVGILFVCIDTIEITNA-NYIEYGPLKGDISPGLNP-------------YQRGCSAIDRCRGGSNVIDGDEK--------IDDKENDT---YGK
        KGS L+F+GIL V    IEITNA  YI Y  LK D+SPG +P             YQRGCSAI+RCR   + ID +EK        IDD E+D    + +
Subjt:  KGSTLIFVGILFVCIDTIEITNA-NYIEYGPLKGDISPGLNP-------------YQRGCSAIDRCRGGSNVIDGDEK--------IDDKENDT---YGK

Query:  EKRIKTDDKK--------DIVDGEIEKIHNDDAGNGVIGSEEKSVETNTLKINITN
           IK DDK+        D ++ + EK     AG+ +  SEEK    N LK+++ N
Subjt:  EKRIKTDDKK--------DIVDGEIEKIHNDDAGNGVIGSEEKSVETNTLKINITN

XP_022159360.1 uncharacterized protein LOC111025777 [Momordica charantia]7.5e-1747.79Show/hide
Query:  MAIIKGSTLIFVGILFVCIDTIEITNA-NYIEYGPLKGDISPG-------------LNPYQRGCSAIDRCRGGSNVIDGDEKI--DDKENDTY-GKEKRI
        MAI KGS  IFVGIL  C+  I+ITNA  +I Y PL+GD+SPG              NPY+RGC++IDRCRGGS++ID  E I   D EN     K K +
Subjt:  MAIIKGSTLIFVGILFVCIDTIEITNA-NYIEYGPLKGDISPG-------------LNPYQRGCSAIDRCRGGSNVIDGDEKI--DDKENDTY-GKEKRI

Query:  KTDDKKDIVDGEIEKIHNDDAGNGVIGSEEKSVETN
        K+D K D++ G  EKI   DA N V  S+EK + ++
Subjt:  KTDDKKDIVDGEIEKIHNDDAGNGVIGSEEKSVETN

XP_022942029.1 auxin-induced in root cultures protein 12-like [Cucurbita moschata]2.8e-0837.88Show/hide
Query:  MAIIKGSTLIFVGILFVCIDTIEIT--NANYIEYGPLKGDISPG-------------LNPYQRGCSAIDRCRGG-SNVIDGDEKIDDKENDTYGKEKRIK
        MAI   + L+  G LF+CID + IT  NAN I+Y  ++ D+SPG              NPY+RGC+AI++CRG  S V++  EKID K ND    E +  
Subjt:  MAIIKGSTLIFVGILFVCIDTIEIT--NANYIEYGPLKGDISPG-------------LNPYQRGCSAIDRCRGG-SNVIDGDEKIDDKENDTYGKEKRIK

Query:  TDD---KKDIVDGEIEKIHN---DDAGNGVIG
        TD+   K   V     KI+    ++  +G++G
Subjt:  TDD---KKDIVDGEIEKIHN---DDAGNGVIG

XP_022961577.1 protein RALF-like 9 [Cucurbita moschata]1.2e-0642.86Show/hide
Query:  KGSTLIFVGILFVCIDTIEITNA-NYIEYGPLK-------GDISPGL------NPYQRGCSAIDRCRGGSNVIDGDEKIDDKENDTYGKEKRIKTDDKKD
        KG+ +IF+ +LFV I+ IEITNA +YI Y PLK           P L      NPYQRGC+ IDRCRG     + D+ ID+ E D          D++ D
Subjt:  KGSTLIFVGILFVCIDTIEITNA-NYIEYGPLK-------GDISPGL------NPYQRGCSAIDRCRGGSNVIDGDEKIDDKENDTYGKEKRIKTDDKKD

Query:  IVDGE
        IVD +
Subjt:  IVDGE

TrEMBL top hitse value%identityAlignment
A0A0A0L8B1 Uncharacterized protein8.1e-0946.99Show/hide
Query:  MAIIKGSTLIFVGILFVCIDTIEITNA-NYIEYGPL-KGDISPG-------------LNPYQRGCSAIDRCRGGSNVIDGDEK
        M + K  TL+F+GIL V  D I ITNA  +I+YG +  GD+SPG              NPYQRGC+ IDRCR G+++ID +E+
Subjt:  MAIIKGSTLIFVGILFVCIDTIEITNA-NYIEYGPL-KGDISPG-------------LNPYQRGCSAIDRCRGGSNVIDGDEK

A0A6J1C8U5 uncharacterized protein LOC1110084953.5e-1240.38Show/hide
Query:  KGSTLIFVGILFVCIDTIEITNA-NYIEYGPLKGDISPGLNP-------------YQRGCSAIDRCRGGSNVIDGDEK--------IDDKENDT---YGK
        KGS L+F+GIL V    IEITNA  YI Y  LK D+SPG +P             YQRGCSAI+RCR   + ID +EK        IDD E+D    + +
Subjt:  KGSTLIFVGILFVCIDTIEITNA-NYIEYGPLKGDISPGLNP-------------YQRGCSAIDRCRGGSNVIDGDEK--------IDDKENDT---YGK

Query:  EKRIKTDDKK--------DIVDGEIEKIHNDDAGNGVIGSEEKSVETNTLKINITN
           IK DDK+        D ++ + EK     AG+ +  SEEK    N LK+++ N
Subjt:  EKRIKTDDKK--------DIVDGEIEKIHNDDAGNGVIGSEEKSVETNTLKINITN

A0A6J1DYH7 uncharacterized protein LOC1110257773.6e-1747.79Show/hide
Query:  MAIIKGSTLIFVGILFVCIDTIEITNA-NYIEYGPLKGDISPG-------------LNPYQRGCSAIDRCRGGSNVIDGDEKI--DDKENDTY-GKEKRI
        MAI KGS  IFVGIL  C+  I+ITNA  +I Y PL+GD+SPG              NPY+RGC++IDRCRGGS++ID  E I   D EN     K K +
Subjt:  MAIIKGSTLIFVGILFVCIDTIEITNA-NYIEYGPLKGDISPG-------------LNPYQRGCSAIDRCRGGSNVIDGDEKI--DDKENDTY-GKEKRI

Query:  KTDDKKDIVDGEIEKIHNDDAGNGVIGSEEKSVETN
        K+D K D++ G  EKI   DA N V  S+EK + ++
Subjt:  KTDDKKDIVDGEIEKIHNDDAGNGVIGSEEKSVETN

A0A6J1FQ53 auxin-induced in root cultures protein 12-like1.4e-0837.88Show/hide
Query:  MAIIKGSTLIFVGILFVCIDTIEIT--NANYIEYGPLKGDISPG-------------LNPYQRGCSAIDRCRGG-SNVIDGDEKIDDKENDTYGKEKRIK
        MAI   + L+  G LF+CID + IT  NAN I+Y  ++ D+SPG              NPY+RGC+AI++CRG  S V++  EKID K ND    E +  
Subjt:  MAIIKGSTLIFVGILFVCIDTIEIT--NANYIEYGPLKGDISPG-------------LNPYQRGCSAIDRCRGG-SNVIDGDEKIDDKENDTYGKEKRIK

Query:  TDD---KKDIVDGEIEKIHN---DDAGNGVIG
        TD+   K   V     KI+    ++  +G++G
Subjt:  TDD---KKDIVDGEIEKIHN---DDAGNGVIG

A0A6J1HAJ8 protein RALF-like 95.8e-0742.86Show/hide
Query:  KGSTLIFVGILFVCIDTIEITNA-NYIEYGPLK-------GDISPGL------NPYQRGCSAIDRCRGGSNVIDGDEKIDDKENDTYGKEKRIKTDDKKD
        KG+ +IF+ +LFV I+ IEITNA +YI Y PLK           P L      NPYQRGC+ IDRCRG     + D+ ID+ E D          D++ D
Subjt:  KGSTLIFVGILFVCIDTIEITNA-NYIEYGPLK-------GDISPGL------NPYQRGCSAIDRCRGGSNVIDGDEKIDDKENDTYGKEKRIKTDDKKD

Query:  IVDGE
        IVD +
Subjt:  IVDGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATCATCAAAGGAAGCACGCTTATTTTTGTTGGCATTCTCTTTGTTTGTATTGACACGATTGAGATTACAAATGCAAATTACATCGAGTATGGTCCTCTAAAAGG
TGATATTAGTCCTGGATTAAACCCATATCAAAGAGGTTGTAGTGCAATCGACCGTTGCAGAGGAGGATCTAATGTCATAGATGGTGATGAAAAAATAGACGATAAAGAGA
ATGATACATATGGTAAAGAAAAGAGGATCAAGACCGATGACAAAAAAGATATTGTGGATGGTGAAATAGAAAAGATTCATAACGACGATGCAGGAAATGGTGTTATAGGC
AGTGAAGAAAAGAGTGTTGAAACTAATACACTCAAGATTAACATCACAAATGTTAACATCCCAAAAAAAAAAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATCATCAAAGGAAGCACGCTTATTTTTGTTGGCATTCTCTTTGTTTGTATTGACACGATTGAGATTACAAATGCAAATTACATCGAGTATGGTCCTCTAAAAGG
TGATATTAGTCCTGGATTAAACCCATATCAAAGAGGTTGTAGTGCAATCGACCGTTGCAGAGGAGGATCTAATGTCATAGATGGTGATGAAAAAATAGACGATAAAGAGA
ATGATACATATGGTAAAGAAAAGAGGATCAAGACCGATGACAAAAAAGATATTGTGGATGGTGAAATAGAAAAGATTCATAACGACGATGCAGGAAATGGTGTTATAGGC
AGTGAAGAAAAGAGTGTTGAAACTAATACACTCAAGATTAACATCACAAATGTTAACATCCCAAAAAAAAAAGATTAA
Protein sequenceShow/hide protein sequence
MAIIKGSTLIFVGILFVCIDTIEITNANYIEYGPLKGDISPGLNPYQRGCSAIDRCRGGSNVIDGDEKIDDKENDTYGKEKRIKTDDKKDIVDGEIEKIHNDDAGNGVIG
SEEKSVETNTLKINITNVNIPKKKD