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Tan0013191 (gene) of Snake gourd v1 genome

Gene IDTan0013191
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationLG08:45926404..45926826
RNA-Seq ExpressionTan0013191
SyntenyTan0013191
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]1.3e-2747.83Show/hide
Query:  MPKGRAVDLHPFDLEIERTCRRLLREGKAETHTMADQELINNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGAFRGLATEDPKFHLQN
        M + R+ D+ P D EIERT R  LR  K       D+E++  P+ +++Y +PV +   + I+  PINANNFELK  +I MV++  F G   +DP  HL  
Subjt:  MPKGRAVDLHPFDLEIERTCRRLLREGKAETHTMADQELINNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGAFRGLATEDPKFHLQN

Query:  FLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSL
        FLEIC T K+NG++ D+IRLRLFPFSLR +A+ WL SL
Subjt:  FLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSL

PKA48167.1 hypothetical protein AXF42_Ash020512 [Apostasia shenzhenica]8.3e-2744.16Show/hide
Query:  MPKGRAVDLHPFDLEIERTCRRLLREGKAET-------------HTMADQELINNP-KPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGA-
        M +    DL PFD EIERT  ++ R+ K +                M DQ  I    + +REY  P  +   T +V   + ANNFE+K  +IQM+++   
Subjt:  MPKGRAVDLHPFDLEIERTCRRLLREGKAET-------------HTMADQELINNP-KPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGA-

Query:  FRGLATEDPKFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLP
        F GL ++DP  H+ NFLEIC TFK NG+S D+IRLRLFPFSL+ +AK WL SLP
Subjt:  FRGLATEDPKFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLP

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]8.2e-3556.83Show/hide
Query:  MPKGRAVDLHPFDLEIERTCRRLLREGKAETHTMADQELINNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGAFRGLATEDPKFHLQN
        MP+    +L P D EI+RT RR LR    +T  MA++     PK IR+YFQP   + Q GI++ PIN NNFELK G+IQM RE AFRG   EDP  HL++
Subjt:  MPKGRAVDLHPFDLEIERTCRRLLREGKAETHTMADQELINNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGAFRGLATEDPKFHLQN

Query:  FLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLP
        FLEICGT KMNG+S D+I+LRLFPFSL+ RAK+WL ++P
Subjt:  FLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLP

XP_017428686.1 PREDICTED: uncharacterized protein LOC108336731 [Vigna angularis]1.3e-2749.66Show/hide
Query:  FDLEIERTCR-----------------RLLREGKAETHTMADQELINNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGAFRGLATEDP
        FD EIERT R                 RL+ +GK ET TMADQE +   K +R+Y  P  +S Q  IV  PI ANNFE+K  ++Q++++  F G  +EDP
Subjt:  FDLEIERTCR-----------------RLLREGKAETHTMADQELINNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGAFRGLATEDP

Query:  KFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLP
          HL+NFL IC T K NG+S D+IRLRLFPFSLR +AK WL S P
Subjt:  KFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLP

XP_022843226.1 uncharacterized protein LOC111366761 [Olea europaea var. sylvestris]8.3e-2747.92Show/hide
Query:  MPKGRAVDLHPFDLEIERTCRRLLREGKAETHTMADQEL-----INNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGAFRGLATEDPK
        M + R +DL   D E ERT R L    + E   MA+Q++      N  + IR+Y +PV +   +GI    I A NFELK G+I MV++  F G A EDP 
Subjt:  MPKGRAVDLHPFDLEIERTCRRLLREGKAETHTMADQEL-----INNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGAFRGLATEDPK

Query:  FHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLP
         HL +FLEIC T KMNG++ D+IRLRLF FSLR +AK W  SLP
Subjt:  FHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLP

TrEMBL top hitse value%identityAlignment
A0A1U8Q202 uncharacterized protein LOC1091142083.4e-2650Show/hide
Query:  PFDLEIERT-CRRL--LREGKAETHTMADQELINNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGA-FRGLATEDPKFHLQNFLEICG
        P+D EIERT C RL   R+ +AET  MA+      P+ + +Y +P        IV   I+ANNFE+K  +IQM++    F G+A EDP  H+ NFLEIC 
Subjt:  PFDLEIERT-CRRL--LREGKAETHTMADQELINNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGA-FRGLATEDPKFHLQNFLEICG

Query:  TFKMNGISADSIRLRLFPFSLRGRAKEWLGSLPS
        TFK NG+S D +RLRLFPFSL+ +AK WL SLP+
Subjt:  TFKMNGISADSIRLRLFPFSLRGRAKEWLGSLPS

A0A2H9ZY12 Uncharacterized protein4.0e-2744.16Show/hide
Query:  MPKGRAVDLHPFDLEIERTCRRLLREGKAET-------------HTMADQELINNP-KPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGA-
        M +    DL PFD EIERT  ++ R+ K +                M DQ  I    + +REY  P  +   T +V   + ANNFE+K  +IQM+++   
Subjt:  MPKGRAVDLHPFDLEIERTCRRLLREGKAET-------------HTMADQELINNP-KPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGA-

Query:  FRGLATEDPKFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLP
        F GL ++DP  H+ NFLEIC TFK NG+S D+IRLRLFPFSL+ +AK WL SLP
Subjt:  FRGLATEDPKFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLP

A0A4R5JE57 Retrotrans_gag domain-containing protein (Fragment)2.9e-2556.73Show/hide
Query:  QELINNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGAFRGLATEDPKFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLG
        Q  INN +P+RE+  P+ D  Q  I    I+ANNFELK  +IQM++   F G ATEDP  HL +FLEIC TFK NG+S D++RLRLFPFSLR + K WL 
Subjt:  QELINNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGAFRGLATEDPKFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLG

Query:  SLPS
        SLP+
Subjt:  SLPS

A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129452.2e-2544.81Show/hide
Query:  MPKGRAVDLHPFDLEIERTCRRLLREG---KAETHTMADQELINN----------PKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGA-F
        M +   ++L PFD +IERT RR  RE         TMA+    N            + +R+Y  P+       I    INANNFE+K   IQM++    F
Subjt:  MPKGRAVDLHPFDLEIERTCRRLLREG---KAETHTMADQELINN----------PKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGA-F

Query:  RGLATEDPKFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLPS
         GL ++DP  HL NFLEIC TFK NG++ D+IRLRLFPFSLR +AK WL SLP+
Subjt:  RGLATEDPKFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLPS

A0A6J0ZYV0 uncharacterized protein LOC1104134132.9e-2544.81Show/hide
Query:  MPKGRAVDLHPFDLEIERTCRRLLREG---KAETHTMADQELINN----------PKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGA-F
        M +   ++L PFD +IERT RR  RE         TMA+    N            + +R+Y  P+       I    INANNFE+K   IQM++    F
Subjt:  MPKGRAVDLHPFDLEIERTCRRLLREG---KAETHTMADQELINN----------PKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGA-F

Query:  RGLATEDPKFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLPS
         GL ++DP  HL NFLEIC TFK NG++ D+IRLRLFPFSLR +AK WL SLP+
Subjt:  RGLATEDPKFHLQNFLEICGTFKMNGISADSIRLRLFPFSLRGRAKEWLGSLPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAGGGGAGAGCTGTAGACTTGCACCCTTTTGATCTTGAGATCGAGAGGACCTGTAGGAGACTCCTAAGGGAAGGAAAAGCAGAAACTCATACTATGGCTGATCA
GGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTGATTCTGAGCAGACTGGAATAGTCCATGCCCCTATAAATGCTAATAATTTTGAACTTA
AGACAGGGATGATACAGATGGTTAGGGAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAAGTTTCATCTTCAAAATTTCTTAGAAATCTGTGGTACATTTAAAATG
AATGGTATCTCTGCTGATAGTATTCGCTTACGTCTCTTCCCTTTCTCTTTGCGGGGTAGAGCCAAAGAATGGCTAGGGTCCCTTCCCTCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAGGGGAGAGCTGTAGACTTGCACCCTTTTGATCTTGAGATCGAGAGGACCTGTAGGAGACTCCTAAGGGAAGGAAAAGCAGAAACTCATACTATGGCTGATCA
GGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTGATTCTGAGCAGACTGGAATAGTCCATGCCCCTATAAATGCTAATAATTTTGAACTTA
AGACAGGGATGATACAGATGGTTAGGGAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAAGTTTCATCTTCAAAATTTCTTAGAAATCTGTGGTACATTTAAAATG
AATGGTATCTCTGCTGATAGTATTCGCTTACGTCTCTTCCCTTTCTCTTTGCGGGGTAGAGCCAAAGAATGGCTAGGGTCCCTTCCCTCGTAG
Protein sequenceShow/hide protein sequence
MPKGRAVDLHPFDLEIERTCRRLLREGKAETHTMADQELINNPKPIREYFQPVFDSEQTGIVHAPINANNFELKTGMIQMVREGAFRGLATEDPKFHLQNFLEICGTFKM
NGISADSIRLRLFPFSLRGRAKEWLGSLPS