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Tan0013263 (gene) of Snake gourd v1 genome

Gene IDTan0013263
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG06:9129131..9130545
RNA-Seq ExpressionTan0013263
SyntenyTan0013263
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7147901.1 hypothetical protein RHSIM_Rhsim03G0083400 [Rhododendron simsii]9.4e-0735.24Show/hide
Query:  DDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEGAALSKYGPNLRT-------VEFKKLSDIKGGLRKREDSESLKKSNTSSEIVKNSSNNS
        DD  +DRWI  +YEKLP+FC+ CGR+GH  + C      +E    S YGP LRT       V  + + +  GG   R+++ +LK+   S  +V  ++  S
Subjt:  DDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEGAALSKYGPNLRT-------VEFKKLSDIKGGLRKREDSESLKKSNTSSEIVKNSSNNS

Query:  EIRVQ
        E+ ++
Subjt:  EIRVQ

KAG0550818.1 hypothetical protein BDA96_01G370300 [Sorghum bicolor]8.5e-0850.94Show/hide
Query:  KLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEG
        K  +RG++++  + E D W P RYE LP FC+ CG LGH +KECD C+E E G
Subjt:  KLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEG

KAG5548220.1 hypothetical protein RHGRI_013801 [Rhododendron griersonianum]7.2e-0752.83Show/hide
Query:  DSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEGAALSKYGPNLRT
        +S +DRWI  +YE+LP+FC+ CGR+GH  K C     GE+G   S YGP LRT
Subjt:  DSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEGAALSKYGPNLRT

OQU92454.1 hypothetical protein SORBI_3001G347001 [Sorghum bicolor]3.8e-0846.88Show/hide
Query:  KLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEGAALSKYGPNLR
        K  +RG++++  + E D W P RYE LP FC+ CG LGH +KECD C+E E G    ++G  LR
Subjt:  KLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEGAALSKYGPNLR

TXG65036.1 hypothetical protein EZV62_012030 [Acer yangbiense]9.4e-0739.66Show/hide
Query:  EIPVDLRRFAQK---QKQRGGDFKLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKEC---DRCLEGEEGAALSKYGPNLRTVEFKKLSDI
        E+P D +    K    K R   FK   R L +K+D SE    I  +YE+LPEFC+ CG++GH+ +EC   D   +  EGA  +KYG  LR V   K S +
Subjt:  EIPVDLRRFAQK---QKQRGGDFKLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKEC---DRCLEGEEGAALSKYGPNLRTVEFKKLSDI

Query:  KGGLRKREDSESLKKS
        K   R+ E+S    KS
Subjt:  KGGLRKREDSESLKKS

TrEMBL top hitse value%identityAlignment
A0A1Z5S941 CCHC-type domain-containing protein1.8e-0846.88Show/hide
Query:  KLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEGAALSKYGPNLR
        K  +RG++++  + E D W P RYE LP FC+ CG LGH +KECD C+E E G    ++G  LR
Subjt:  KLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEGAALSKYGPNLR

A0A5C7I9I6 Uncharacterized protein4.6e-0739.66Show/hide
Query:  EIPVDLRRFAQK---QKQRGGDFKLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKEC---DRCLEGEEGAALSKYGPNLRTVEFKKLSDI
        E+P D +    K    K R   FK   R L +K+D SE    I  +YE+LPEFC+ CG++GH+ +EC   D   +  EGA  +KYG  LR V   K S +
Subjt:  EIPVDLRRFAQK---QKQRGGDFKLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKEC---DRCLEGEEGAALSKYGPNLRTVEFKKLSDI

Query:  KGGLRKREDSESLKKS
        K   R+ E+S    KS
Subjt:  KGGLRKREDSESLKKS

A0A6J1D765 uncharacterized protein LOC1110179021.0e-0642.42Show/hide
Query:  RGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEGAALSKYGPNLRTVEFKK
        RG+ +K  D  KD W P RYEKLP+FC++CG++GH+ +EC++  +     +  +YG  LR    KK
Subjt:  RGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEGAALSKYGPNLRTVEFKK

A0A803P8K3 Uncharacterized protein5.9e-0744.78Show/hide
Query:  KLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLE----GEEGAALSKYGPNL
        K  LRG M+K+ DS+ + W+  RYE+LPEFCF+CG +GH  + C   LE    G E +   +YGP++
Subjt:  KLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLE----GEEGAALSKYGPNL

A0A803QJP0 Uncharacterized protein2.0e-0746.27Show/hide
Query:  KLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLE----GEEGAALSKYGPNL
        K  LRG M+K+ DS+ + W+  RYE+LPEFCF+CG +GH  + C   LE    G E   L +YGP++
Subjt:  KLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLE----GEEGAALSKYGPNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTAGCTTGTTGGCTGCTCAATACAAAAGCATGAAACTAACTGCTGAAGAAGAGATACCGGTTGATCTACGTCGTTTTGCCCAGAAACAGAAACAGAGGGGAGG
TGATTTTAAATTGTGTCTGAGAGGGTTAATGATCAAAATCGATGACAGTGAGAAGGATAGATGGATTCCTTGCAGATATGAGAAGTTGCCTGAATTCTGCTTTGATTGTG
GGAGGTTAGGGCATACTCAAAAGGAATGTGACCGTTGTTTGGAGGGAGAGGAGGGAGCTGCACTTTCTAAATATGGTCCCAACTTACGAACAGTGGAATTCAAAAAACTT
TCTGATATCAAAGGGGGCCTTAGAAAAAGGGAGGATTCTGAATCTTTGAAAAAATCGAATACAAGCAGTGAAATAGTAAAGAATAGCTCCAACAACAGTGAAATTAGGGT
TCAGGGGGAAAGAAGGAAGATTGTGAGTTCTTGTATGAATGAAGGGAGGAATGGAGATGATTATATGCCAATAGTTGAAACTAATACCTGTGTTGAAAAAGGGAAGAATG
TAGAAACCATTAAGAATGTGGCTATGGAAGAAAATATGACTGATGTGGGGATAGAAGGAGGCGTTCGTTTAAAGGGATTTGATTTGAATTCCTTGGATGGAGAAGATATG
ATGTTGCAGGAGAATCTGGGCCTTAATCATGGGGATAGTTGCAAACCTTCACTTTCCAAAAAGAAAATATGGAGAAGAATGATTATTGATAAAGAGTCCTCACTTGCAAA
ATCTGGAGATTCTAGTAGAAGTAAGAGACCATTTGAAGTCGATTACCTGGAAGAACCTCACTTGAATGAGAATAAGAAAAAGATGAAGATTGGGGATGTAGATCTTGTTC
CGTGTTCTTTATTGGTGAACCCTGATACTCAGGGTTGCCATTCATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGTTAGCTTGTTGGCTGCTCAATACAAAAGCATGAAACTAACTGCTGAAGAAGAGATACCGGTTGATCTACGTCGTTTTGCCCAGAAACAGAAACAGAGGGGAGG
TGATTTTAAATTGTGTCTGAGAGGGTTAATGATCAAAATCGATGACAGTGAGAAGGATAGATGGATTCCTTGCAGATATGAGAAGTTGCCTGAATTCTGCTTTGATTGTG
GGAGGTTAGGGCATACTCAAAAGGAATGTGACCGTTGTTTGGAGGGAGAGGAGGGAGCTGCACTTTCTAAATATGGTCCCAACTTACGAACAGTGGAATTCAAAAAACTT
TCTGATATCAAAGGGGGCCTTAGAAAAAGGGAGGATTCTGAATCTTTGAAAAAATCGAATACAAGCAGTGAAATAGTAAAGAATAGCTCCAACAACAGTGAAATTAGGGT
TCAGGGGGAAAGAAGGAAGATTGTGAGTTCTTGTATGAATGAAGGGAGGAATGGAGATGATTATATGCCAATAGTTGAAACTAATACCTGTGTTGAAAAAGGGAAGAATG
TAGAAACCATTAAGAATGTGGCTATGGAAGAAAATATGACTGATGTGGGGATAGAAGGAGGCGTTCGTTTAAAGGGATTTGATTTGAATTCCTTGGATGGAGAAGATATG
ATGTTGCAGGAGAATCTGGGCCTTAATCATGGGGATAGTTGCAAACCTTCACTTTCCAAAAAGAAAATATGGAGAAGAATGATTATTGATAAAGAGTCCTCACTTGCAAA
ATCTGGAGATTCTAGTAGAAGTAAGAGACCATTTGAAGTCGATTACCTGGAAGAACCTCACTTGAATGAGAATAAGAAAAAGATGAAGATTGGGGATGTAGATCTTGTTC
CGTGTTCTTTATTGGTGAACCCTGATACTCAGGGTTGCCATTCATTATGA
Protein sequenceShow/hide protein sequence
MDVSLLAAQYKSMKLTAEEEIPVDLRRFAQKQKQRGGDFKLCLRGLMIKIDDSEKDRWIPCRYEKLPEFCFDCGRLGHTQKECDRCLEGEEGAALSKYGPNLRTVEFKKL
SDIKGGLRKREDSESLKKSNTSSEIVKNSSNNSEIRVQGERRKIVSSCMNEGRNGDDYMPIVETNTCVEKGKNVETIKNVAMEENMTDVGIEGGVRLKGFDLNSLDGEDM
MLQENLGLNHGDSCKPSLSKKKIWRRMIIDKESSLAKSGDSSRSKRPFEVDYLEEPHLNENKKKMKIGDVDLVPCSLLVNPDTQGCHSL