CuGenDBv2

Gene ID	Tan0013293
Organism	Trichosanthes anguina (Snake gourd v1)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Genome location	LG04:789457..790436
RNA-Seq Expression	Tan0013293
Synteny	Tan0013293
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004135291.1 photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]

2.3e-74

89.39

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Query:  MAATMATMAILNAKCFTP-NKTPLLPSKP-TRPIALP-NLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NKTPLLPSKP T+PI+LP  + TK SLAGTAIAGAIFST+SSGDAA AAQQIAD+AEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKTPLLPSKP-TRPIALP-NLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE
        QPALNQ+NRMRTEKAVI+GLGLGGL ASGLVGTPEAMAAEA SDGRGQLLLIVV PAI WVL+NILQPALNQLNRMRSE
Subjt:  QPALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

XP_008446112.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo]

4.6e-75

89.94

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Query:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTRPIALP-NLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NKTP LLPSKPT+PI+LP  + TK SLAGTAIAGAIFST+SSGDAAFAAQQIAD+AEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTRPIALP-NLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE
        QPALNQ+NRMRTEKAVI+GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVV PAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

XP_022956891.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschata]

3.9e-74

88.76

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Query:  MAATMATMAILNAKCFTPNKT--PLLPSKPTRPIALPNLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+T  PLLPSKPT PI+LP    KSSLAG+AIAGAIFST S  DAAFAAQQIAD+AEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKT--PLLPSKPTRPIALPNLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE
        PALNQ+NRMRTEKAVI GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVV PAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]

7.8e-75

89.33

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Query:  MAATMATMAILNAKCFTPNKT--PLLPSKPTRPIALPNLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+T  PLLPSKPTRPI+LP    KSSLAG+AIAGAIFST S  DAAFAAQQIAD+AEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKT--PLLPSKPTRPIALPNLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE
        PALNQ+NRMRTEKAVI GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVV PAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

XP_038891337.1 photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida]

1.8e-79

92.7

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Query:  MAATMATMAILNAKCFTPNKTPLLPSKPTRPIALPNL--QTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNKTPLLPSKPTRPI+LP+L   TK SLAGTAIAGAIFST SSGDAAFAAQQIAD+AEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKTPLLPSKPTRPIALPNL--QTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE
        PALNQ+NRMRTEKAVI+GLGLGGL ASGLVGTPEAMAAEASSDGRGQLLLIVV PAI WVLYNILQPALNQLNRMRSE
Subjt:  PALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTG2 Uncharacterized protein

1.1e-74

89.39

Show/hide

Query:  MAATMATMAILNAKCFTP-NKTPLLPSKP-TRPIALP-NLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NKTPLLPSKP T+PI+LP  + TK SLAGTAIAGAIFST+SSGDAA AAQQIAD+AEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKTPLLPSKP-TRPIALP-NLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE
        QPALNQ+NRMRTEKAVI+GLGLGGL ASGLVGTPEAMAAEA SDGRGQLLLIVV PAI WVL+NILQPALNQLNRMRSE
Subjt:  QPALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like

2.2e-75

89.94

Show/hide

Query:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTRPIALP-NLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NKTP LLPSKPT+PI+LP  + TK SLAGTAIAGAIFST+SSGDAAFAAQQIAD+AEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTRPIALP-NLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE
        QPALNQ+NRMRTEKAVI+GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVV PAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

A0A5A7SY80 Photosystem II core complex proteins psbY

2.2e-75

89.94

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Query:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTRPIALP-NLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP NKTP LLPSKPT+PI+LP  + TK SLAGTAIAGAIFST+SSGDAAFAAQQIAD+AEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTP-NKTP-LLPSKPTRPIALP-NLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE
        QPALNQ+NRMRTEKAVI+GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVV PAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like

1.9e-74

88.76

Show/hide

Query:  MAATMATMAILNAKCFTPNKT--PLLPSKPTRPIALPNLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+T  PLLPSKPT PI+LP    KSSLAG+AIAGAIFST S  DAAFAAQQIAD+AEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKT--PLLPSKPTRPIALPNLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE
        PALNQ+NRMRTEKAVI GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVV PAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like

3.8e-75

89.33

Show/hide

Query:  MAATMATMAILNAKCFTPNKT--PLLPSKPTRPIALPNLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPN+T  PLLPSKPTRPI+LP    KSSLAG+AIAGAIFST S  DAAFAAQQIAD+AEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNKT--PLLPSKPTRPIALPNLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE
        PALNQ+NRMRTEKAVI GLGLGGL ASGLVGTPEAMAAEAS+D RGQLLLIVV PAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQLNRMRTEKAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

2.4e-42

56.02

Show/hide

Query:  MAATMATMAILNAKCFTPNKTP-----LLPSKPTRPIALPNLQTKS-SLAGTAIAGAIFSTMSSGDAAFAAQQIADI----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N +P        SKP   +  P     S ++  TA+AGA+FS++S  + A A QQIA +    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNKTP-----LLPSKPTRPIALPNLQTKS-SLAGTAIAGAIFSTMSSGDAAFAAQQIADI----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQLNRMRTEKAVIIGLGL-GGLAASGLVGTP-----EAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K +++GLG+ GGLAASGL+  P      A AA ASSD RGQLLLIVVTPA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQLNRMRTEKAVIIGLGL-GGLAASGLVGTP-----EAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

2.1e-46

60.8

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Query:  MAATMA-TMAILNAKCFT--PNKTPLLPSKPT-RPIALPNLQTKSS---------LAGTAIAGAIFSTMSSGDAAFAAQQIADIA----EGDNRGLALLL
        MAATMA TMA+LN KC T   NKT     KPT +PI+L  L   +S         +   AIAGA+F+T+ S D AFA QQ+ADIA      DNRGLALLL
Subjt:  MAATMA-TMAILNAKCFT--PNKTPLLPSKPT-RPIALPNLQTKSS---------LAGTAIAGAIFSTMSSGDAAFAAQQIADIA----EGDNRGLALLL

Query:  PLIPAVAWVLFNILQPALNQLNRMRTE-KAVIIGLGLGGLAASG-LVGTPEAMAAE----ASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE
        P+IPA+ WVLFNILQPALNQ+N+MR E KA I+GLGL GLA SG L+ TPEA AA       SD RG LLL+VV PAI WVL+NILQPALNQLN+MRS+
Subjt:  PLIPAVAWVLFNILQPALNQLNRMRTE-KAVIIGLGLGGLAASG-LVGTPEAMAAE----ASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

1.7e-43

56.02

Show/hide

Query:  MAATMATMAILNAKCFTPNKTP-----LLPSKPTRPIALPNLQTKS-SLAGTAIAGAIFSTMSSGDAAFAAQQIADI----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N +P        SKP   +  P     S ++  TA+AGA+FS++S  + A A QQIA +    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNKTP-----LLPSKPTRPIALPNLQTKS-SLAGTAIAGAIFSTMSSGDAAFAAQQIADI----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQLNRMRTEKAVIIGLGL-GGLAASGLVGTP-----EAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K +++GLG+ GGLAASGL+  P      A AA ASSD RGQLLLIVVTPA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQLNRMRTEKAVIIGLGL-GGLAASGLVGTP-----EAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRS

Sequences

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CDS sequence

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ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCAAAATGCTTCACCCCCAACAAAACCCCACTCCTCCCCTCAAAACCCACAAGACCCATTGCCCTTCCCAACCT
TCAGACCAAATCCTCCCTCGCCGGAACCGCCATTGCGGGAGCAATCTTCTCGACTATGAGCTCCGGTGACGCTGCCTTCGCCGCCCAGCAAATCGCCGATATTGCGGAAG
GCGACAACCGGGGGCTGGCCCTGTTGCTGCCACTCATCCCGGCGGTGGCTTGGGTTCTGTTCAACATTCTTCAGCCGGCGCTGAATCAGCTGAACCGGATGCGGACGGAG
AAGGCGGTGATTATTGGGCTGGGGCTGGGCGGGCTGGCGGCGTCGGGACTGGTGGGGACGCCGGAAGCTATGGCGGCGGAGGCTTCGAGTGACGGGCGGGGACAGCTGCT
GCTGATTGTGGTGACGCCGGCGATTCTGTGGGTTCTGTACAATATTCTACAGCCGGCGCTGAACCAGCTCAATCGGATGAGGTCCGAGTGA

mRNA sequence

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AAAATAAGAAGATATTATGGATGAGAAAGGAATGGTGGGGTCAACAAATTTGAGGCTGAAAATTTTCCAATCCCACCCTTTTGGATAAGAATACAATCTCCTCTCTCAAT
TTCATTGGCTATCAGTTTCCCCAAATCCTCACTCAAAGTTCCAAAAAAAAAAACTCCCATTTCAGCTCTAACCAGTTACAGAGCAATCTTCAATGGCGGCAACAATGGCG
ACCATGGCGATCCTCAACGCAAAATGCTTCACCCCCAACAAAACCCCACTCCTCCCCTCAAAACCCACAAGACCCATTGCCCTTCCCAACCTTCAGACCAAATCCTCCCT
CGCCGGAACCGCCATTGCGGGAGCAATCTTCTCGACTATGAGCTCCGGTGACGCTGCCTTCGCCGCCCAGCAAATCGCCGATATTGCGGAAGGCGACAACCGGGGGCTGG
CCCTGTTGCTGCCACTCATCCCGGCGGTGGCTTGGGTTCTGTTCAACATTCTTCAGCCGGCGCTGAATCAGCTGAACCGGATGCGGACGGAGAAGGCGGTGATTATTGGG
CTGGGGCTGGGCGGGCTGGCGGCGTCGGGACTGGTGGGGACGCCGGAAGCTATGGCGGCGGAGGCTTCGAGTGACGGGCGGGGACAGCTGCTGCTGATTGTGGTGACGCC
GGCGATTCTGTGGGTTCTGTACAATATTCTACAGCCGGCGCTGAACCAGCTCAATCGGATGAGGTCCGAGTGAAATGGTGATCGGCAAATACCTGTAATTTTAAATGCAA
CTATCCCTTCTGTTTTATAAATGAAGCTTTCGAGTCTAAAGTAAACTTTGGGGTTTTTTTTTTTTTTTTTTTTGAAGTGTTTATAATCAACCATCATCAACTTCAACTTT
CAATATCCTTTATTTTATCGTGTTAGAGAATATTTTTATTAGTTTTTTTTAGTACATCAATAATTTCGGTGATTTGAACCCATCGCTTTTTGGTCGTGAG

Protein sequence

Show/hide protein sequence

MAATMATMAILNAKCFTPNKTPLLPSKPTRPIALPNLQTKSSLAGTAIAGAIFSTMSSGDAAFAAQQIADIAEGDNRGLALLLPLIPAVAWVLFNILQPALNQLNRMRTE
KAVIIGLGLGGLAASGLVGTPEAMAAEASSDGRGQLLLIVVTPAILWVLYNILQPALNQLNRMRSE

Tan0013293 (gene) of Snake gourd v1 genome