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Tan0013311 (gene) of Snake gourd v1 genome

Gene IDTan0013311
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG01:29986138..29986908
RNA-Seq ExpressionTan0013311
SyntenyTan0013311
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]2.5e-6255.64Show/hide
Query:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM
        M SKK AS +  AAS+T+TG +TRSRS+G+   +D+   AIA  I+K +  S K  +V+K++PL++ +     +S + ++ DVMSVMMADV  +  M EM
Subjt:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM

Query:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID
        ERKI+L MK V+ERD EIA LK QMQ RETAESSQTP                                 DMI SSIRAQYGGP+Q+S MYSK Y+KRID
Subjt:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID

Query:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD
        NL+MP+GYQPPKFQQ DGKGN KQH+AHFVETCENAG+ GD LV+QFVR+LKGNAF+
Subjt:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]2.5e-6255.64Show/hide
Query:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM
        M SKK AS +  AAS+T+TG +TRSRS+G+   +D+   AIA  I+K +  S K  +V+K++PL++ +     +S + ++ DVMSVMMADV  +  M EM
Subjt:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM

Query:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID
        ERKI+L MK V+ERD EIA LK QMQ RETAESSQTP                                 DMI SSIRAQYGGP+Q+S MYSK Y+KRID
Subjt:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID

Query:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD
        NL+MP+GYQPPKFQQ DGKGN KQH+AHFVETCENAG+ GD LV+QFVR+LKGNAF+
Subjt:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]2.5e-6255.64Show/hide
Query:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM
        M SKK AS +  AAS+T+TG +TRSRS+G+   +D+   AIA  I+K +  S K  +V+K++PL++ +     +S + ++ DVMSVMMADV  +  M EM
Subjt:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM

Query:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID
        ERKI+L MK V+ERD EIA LK QMQ RETAESSQTP                                 DMI SSIRAQYGGP+Q+S MYSK Y+KRID
Subjt:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID

Query:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD
        NL+MP+GYQPPKFQQ DGKGN KQH+AHFVETCENAG+ GD LV+QFVR+LKGNAF+
Subjt:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]2.5e-6255.64Show/hide
Query:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM
        M SKK AS +  AAS+T+TG +TRSRS+G+   +D+   AIA  I+K +  S K  +V+K++PL++ +     +S + ++ DVMSVMMADV  +  M EM
Subjt:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM

Query:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID
        ERKI+L MK V+ERD EIA LK QMQ RETAESSQTP                                 DMI SSIRAQYGGP+Q+S MYSK Y+KRID
Subjt:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID

Query:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD
        NL+MP+GYQPPKFQQ DGKGN KQH+AHFVETCENAG+ GD LV+QFVR+LKGNAF+
Subjt:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD

XP_031744658.1 uncharacterized protein LOC116405107 [Cucumis sativus]2.5e-6255.64Show/hide
Query:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM
        M SKK AS +  AAS+T+TG +TRSRS+G+   +D+   AIA  I+K +  S K  +V+K++PL++ +     +S + ++ DVMSVMMADV  +  M EM
Subjt:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM

Query:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID
        ERKI+L MK V+ERD EIA LK QMQ RETAESSQTP                                 DMI SSIRAQYGGP+Q+S MYSK Y+KRID
Subjt:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID

Query:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD
        NL+MP+GYQPPKFQQ DGKGN KQH+AHFVETCENAG+ GD LV+QFVR+LKGNAF+
Subjt:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD

TrEMBL top hitse value%identityAlignment
A0A5D3BY54 Ty3-gypsy retrotransposon protein1.3e-5952.92Show/hide
Query:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM
        M SKK AS + V ASN +TG +TRSRS+G+  ++D+  + +A  I+K +  S K  +V+K++PL+D       +S + ++ DVMSVMMAD+  +  M EM
Subjt:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM

Query:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID
        ERKI+  MKAVEERD EI  L+ QM+ RETAESSQTP                                 DMI +SIRAQYGGP Q++ MYSKSY+KRID
Subjt:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID

Query:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD
        NL+MP+GYQPPKFQQ +GKGN KQHIAHF ETCENAG+ GD LV+QFV++LKGNAF+
Subjt:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD

A0A5D3CD35 Ty3-gypsy retrotransposon protein5.9e-5750.58Show/hide
Query:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM
        M SKK AS + V AS+ +TG +T S S+G+  ++D+  + +A  I+K +  S K  +V+K++PL+D F     +S + ++ DVM VMMAD+ ++  M +M
Subjt:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM

Query:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID
        E+KI+  MKA+EE D EI  L+ QM+ RETAESSQTP                                 DMI +SIRAQYGGP Q++ MYSK Y+KRID
Subjt:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID

Query:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD
        NL+MP+GYQPPKFQQ DGKGN KQHIAHFVETC NAG+ GD LV+QFVR+LKGNAF+
Subjt:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD

A0A5D3DHB7 Ty3-gypsy retrotransposon protein5.9e-5756.44Show/hide
Query:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM
        M SKKVAS + VA  + +T  +TRSRS+G+  ++D+  + +A  I+K +  S K  +V+K++PL+D       +S   ++ +VMSVMMAD+ ++  M EM
Subjt:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM

Query:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAES-SQTPDMIMSSIRAQYGGPTQSSLMYSKSYSKRIDNLKMPVGYQPPKFQQLDGKGNLKQHIAHFVET
        ERKI+  MK VEERD EI  L+ QM+ RE AES  Q  DMI++SIR QYGGP Q++ MYSK Y+KR DNL++P+GYQPPKFQQ DGKGN KQHIAHFVET
Subjt:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAES-SQTPDMIMSSIRAQYGGPTQSSLMYSKSYSKRIDNLKMPVGYQPPKFQQLDGKGNLKQHIAHFVET

Query:  CENAGTHGDLLVKQFVRTLKGNAFD
        CENAG+ GD LV+QFVR+LKGNAF+
Subjt:  CENAGTHGDLLVKQFVRTLKGNAFD

A0A5D3DIN4 Ty3-gypsy retrotransposon protein2.9e-5651.36Show/hide
Query:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM
        M SKKVAS +  AAS+++ G VT+S  +   ++E      +  K ++ +  S K R++++D+PLF+  TP    S++ S+ +V+SVMM DV ++  MVEM
Subjt:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM

Query:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID
        E+KI+  MK VEERD EIA LK+QM+  ETAESS+TP                                 DMI++SIRAQYGGP+Q+S MYSK Y+KRID
Subjt:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP---------------------------------DMIMSSIRAQYGGPTQSSLMYSKSYSKRID

Query:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD
        NL+MP+GYQPPKFQQ DGKGN KQHIAHFVE CENAG+ GD LV+QFVR+LKGNAF+
Subjt:  NLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD

A0A5D3DXA8 Ty3-gypsy retrotransposon protein1.0e-5654.04Show/hide
Query:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM
        M SKKVAS + V AS+ +TG +T SR +G+  ++D+  + +A  I+K +  S K  +V+K++PL+D       +S + ++ DVMS+MMAD+  +  M EM
Subjt:  MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEM

Query:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP-----------DMIMSSIRAQYGGPTQSSLMYSKSYSKRIDNLKMPVGYQPPKFQQLDGKGNL
        ERKI+  MK VEER+ EI  L+ QM  RETAESSQTP           DMI +SI+AQYGGP Q++  YSKSY+KRID+L+MP+GYQPPKFQQ D KGN 
Subjt:  ERKISLRMKAVEERDLEIAYLKNQMQNRETAESSQTP-----------DMIMSSIRAQYGGPTQSSLMYSKSYSKRIDNLKMPVGYQPPKFQQLDGKGNL

Query:  KQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD
        KQHIAHF+ETCE AG+ G  LV+QFVR+LKGNAF+
Subjt:  KQHIAHFVETCENAGTHGDLLVKQFVRTLKGNAFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCAAAGAAGGTTGCTTCAACTGCTATTGTTGCCGCAAGCAACACCTTTACAGGGTCGGTAACACGCAGTCGTTCTCGGGGGGTTGAGTTAAAGGAGGACCGAAC
CCCTGATGCGATTGCAAACAAGATCGTCAAGTTGATCGAAGGATCCTCCAAGGATAGAGTGGTAGTCAAAGATGACCCGTTGTTTGACCAGTTTACCCCCGTTGTCGGTC
AATCAAATGAGGCATCGAATAAGGATGTGATGTCTGTGATGATGGCCGATGTGGAATCCGACGAAAGGATGGTAGAGATGGAGAGAAAGATTAGTCTCCGGATGAAGGCG
GTCGAAGAAAGGGATCTAGAGATTGCCTACTTGAAGAATCAAATGCAGAATCGCGAGACTGCCGAGTCAAGTCAAACCCCTGACATGATCATGAGCTCCATCAGAGCTCA
GTACGGCGGACCCACCCAAAGTTCTCTCATGTACTCTAAGTCATACAGTAAGAGAATAGACAATCTGAAGATGCCCGTCGGATACCAACCTCCCAAATTCCAACAGCTCG
ATGGGAAAGGTAACTTGAAGCAACATATCGCTCACTTTGTGGAAACATGCGAGAACGCTGGGACTCACGGCGACCTTCTAGTCAAACAGTTCGTTCGTACGCTGAAAGGG
AATGCCTTTGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATCAAAGAAGGTTGCTTCAACTGCTATTGTTGCCGCAAGCAACACCTTTACAGGGTCGGTAACACGCAGTCGTTCTCGGGGGGTTGAGTTAAAGGAGGACCGAAC
CCCTGATGCGATTGCAAACAAGATCGTCAAGTTGATCGAAGGATCCTCCAAGGATAGAGTGGTAGTCAAAGATGACCCGTTGTTTGACCAGTTTACCCCCGTTGTCGGTC
AATCAAATGAGGCATCGAATAAGGATGTGATGTCTGTGATGATGGCCGATGTGGAATCCGACGAAAGGATGGTAGAGATGGAGAGAAAGATTAGTCTCCGGATGAAGGCG
GTCGAAGAAAGGGATCTAGAGATTGCCTACTTGAAGAATCAAATGCAGAATCGCGAGACTGCCGAGTCAAGTCAAACCCCTGACATGATCATGAGCTCCATCAGAGCTCA
GTACGGCGGACCCACCCAAAGTTCTCTCATGTACTCTAAGTCATACAGTAAGAGAATAGACAATCTGAAGATGCCCGTCGGATACCAACCTCCCAAATTCCAACAGCTCG
ATGGGAAAGGTAACTTGAAGCAACATATCGCTCACTTTGTGGAAACATGCGAGAACGCTGGGACTCACGGCGACCTTCTAGTCAAACAGTTCGTTCGTACGCTGAAAGGG
AATGCCTTTGACTAG
Protein sequenceShow/hide protein sequence
MESKKVASTAIVAASNTFTGSVTRSRSRGVELKEDRTPDAIANKIVKLIEGSSKDRVVVKDDPLFDQFTPVVGQSNEASNKDVMSVMMADVESDERMVEMERKISLRMKA
VEERDLEIAYLKNQMQNRETAESSQTPDMIMSSIRAQYGGPTQSSLMYSKSYSKRIDNLKMPVGYQPPKFQQLDGKGNLKQHIAHFVETCENAGTHGDLLVKQFVRTLKG
NAFD