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Tan0013315 (gene) of Snake gourd v1 genome

Gene IDTan0013315
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG03:51510045..51532431
RNA-Seq ExpressionTan0013315
SyntenyTan0013315
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-0949.44Show/hide
Query:  VEIELPVPDIL----SSTSLIFCTWVVLYSKSI------CVVVNVKQGQQVLL------RGKNVCWLHAVFRAKLAGSSAGGVTTWYQS
        VEIELPVPDIL     S+     TW+ LY +S+       V++  K+ Q  +L      RG +VCWLHA+FRAK AG   GGVTTWYQS
Subjt:  VEIELPVPDIL----SSTSLIFCTWVVLYSKSI------CVVVNVKQGQQVLL------RGKNVCWLHAVFRAKLAGSSAGGVTTWYQS

KAA0054351.1 reverse transcriptase [Cucumis melo var. makuwa]7.0e-0845.16Show/hide
Query:  VEIELPVPDILS----STSLIFCTWVVLYSKSICV----------------VVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTWYQS
        VEI+L VPD L+    S+     TW+ LY +S+ V                V NV      ++RG NVCWLHAVFRA+ AG   GGVTTWYQS
Subjt:  VEIELPVPDILS----STSLIFCTWVVLYSKSICV----------------VVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTWYQS

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]9.2e-0842.42Show/hide
Query:  IHELEVEIELPVPDIL----SSTSLIFCTWVVLYSKSICV----------------VVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTWYQSS
        + +  V IELPVPDIL     S+     TW+ LY +S+ V                V NV  G   ++RG +VCWLHAVFRAK  G   GGVTTW  S+
Subjt:  IHELEVEIELPVPDIL----SSTSLIFCTWVVLYSKSICV----------------VVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTWYQSS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-0949.44Show/hide
Query:  VEIELPVPDIL----SSTSLIFCTWVVLYSKSI------CVVVNVKQGQQVLL------RGKNVCWLHAVFRAKLAGSSAGGVTTWYQS
        VEIELPVPDIL     S+     TW+ LY +S+       V++  K+ Q  +L      RG +VCWLHA+FRAK AG   GGVTTWYQS
Subjt:  VEIELPVPDIL----SSTSLIFCTWVVLYSKSI------CVVVNVKQGQQVLL------RGKNVCWLHAVFRAKLAGSSAGGVTTWYQS

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]1.2e-0750Show/hide
Query:  VEIELPVPDILSSTSLIFCTWVV--------LYSKSICVVVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTW
        VEIELPVPD L +++  F    V        L+     V  NV  G   ++RG +VCWLHAVFRAK+AGS  GGVTTW
Subjt:  VEIELPVPDILSSTSLIFCTWVV--------LYSKSICVVVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTW

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase8.1e-1049.44Show/hide
Query:  VEIELPVPDIL----SSTSLIFCTWVVLYSKSI------CVVVNVKQGQQVLL------RGKNVCWLHAVFRAKLAGSSAGGVTTWYQS
        VEIELPVPDIL     S+     TW+ LY +S+       V++  K+ Q  +L      RG +VCWLHA+FRAK AG   GGVTTWYQS
Subjt:  VEIELPVPDIL----SSTSLIFCTWVVLYSKSI------CVVVNVKQGQQVLL------RGKNVCWLHAVFRAKLAGSSAGGVTTWYQS

A0A5A7UT17 CCHC-type domain-containing protein4.5e-0842.42Show/hide
Query:  IHELEVEIELPVPDIL----SSTSLIFCTWVVLYSKSICV----------------VVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTWYQSS
        + +  V IELPVPDIL     S+     TW+ LY +S+ V                V NV  G   ++RG +VCWLHAVFRAK  G   GGVTTW  S+
Subjt:  IHELEVEIELPVPDIL----SSTSLIFCTWVVLYSKSICV----------------VVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTWYQSS

A0A5D3BTP3 Reverse transcriptase8.1e-1049.44Show/hide
Query:  VEIELPVPDIL----SSTSLIFCTWVVLYSKSI------CVVVNVKQGQQVLL------RGKNVCWLHAVFRAKLAGSSAGGVTTWYQS
        VEIELPVPDIL     S+     TW+ LY +S+       V++  K+ Q  +L      RG +VCWLHA+FRAK AG   GGVTTWYQS
Subjt:  VEIELPVPDIL----SSTSLIFCTWVVLYSKSI------CVVVNVKQGQQVLL------RGKNVCWLHAVFRAKLAGSSAGGVTTWYQS

A0A5D3C0X3 Retrotrans_gag domain-containing protein5.8e-0850Show/hide
Query:  VEIELPVPDILSSTSLIFCTWVV--------LYSKSICVVVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTW
        VEIELPVPD L +++  F    V        L+     V  NV  G   ++RG +VCWLHAVFRAK+AGS  GGVTTW
Subjt:  VEIELPVPDILSSTSLIFCTWVV--------LYSKSICVVVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTW

A0A5D3CMM1 Reverse transcriptase3.4e-0845.16Show/hide
Query:  VEIELPVPDILS----STSLIFCTWVVLYSKSICV----------------VVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTWYQS
        VEI+L VPD L+    S+     TW+ LY +S+ V                V NV      ++RG NVCWLHAVFRA+ AG   GGVTTWYQS
Subjt:  VEIELPVPDILS----STSLIFCTWVVLYSKSICV----------------VVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTTGTAATTTTAAGGTTGAAATTCATGAGCTCGAGGTAGAGATCGAGCTCCCAGTGCCTGACATCCTAAGCTCCACGAGCTTGATATTTTGTACGTGGGTGGT
GTTGTATAGCAAGTCTATATGTGTTGTAGTAAATGTTAAACAGGGTCAACAGGTATTGTTAAGAGGTAAGAATGTCTGTTGGCTTCATGCTGTCTTCAGGGCTAAGTTAG
CAGGTAGTTCAGCAGGGGGTGTGACAACTTGGTATCAGAGTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTTGTAATTTTAAGGTTGAAATTCATGAGCTCGAGGTAGAGATCGAGCTCCCAGTGCCTGACATCCTAAGCTCCACGAGCTTGATATTTTGTACGTGGGTGGT
GTTGTATAGCAAGTCTATATGTGTTGTAGTAAATGTTAAACAGGGTCAACAGGTATTGTTAAGAGGTAAGAATGTCTGTTGGCTTCATGCTGTCTTCAGGGCTAAGTTAG
CAGGTAGTTCAGCAGGGGGTGTGACAACTTGGTATCAGAGTAGTTAG
Protein sequenceShow/hide protein sequence
MVFCNFKVEIHELEVEIELPVPDILSSTSLIFCTWVVLYSKSICVVVNVKQGQQVLLRGKNVCWLHAVFRAKLAGSSAGGVTTWYQSS