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Tan0013349 (gene) of Snake gourd v1 genome

Gene IDTan0013349
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionnuclear transcription factor Y subunit C-1-like
Genome locationLG01:11468024..11468395
RNA-Seq ExpressionTan0013349
SyntenyTan0013349
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577185.1 hypothetical protein SDJN03_24759, partial [Cucurbita argyrosperma subsp. sororia]8.5e-5285.38Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIFHET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  GT------GGDLAESETVSMPVEMR-FLQS
         T        +L ESET+S+PVEM  FLQS
Subjt:  GT------GGDLAESETVSMPVEMR-FLQS

XP_022136847.1 nuclear transcription factor Y subunit C-1-like [Momordica charantia]8.5e-5287.5Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGV+YWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELT+RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE 
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  GTGGDLAESETVSMPVEMRF
         + G++A+  TVSMP+EM F
Subjt:  GTGGDLAESETVSMPVEMRF

XP_022931515.1 nuclear transcription factor Y subunit C-4-like [Cucurbita moschata]8.5e-5285.38Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIFHET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  GT------GGDLAESETVSMPVEMR-FLQS
         T        +L ESET+S+PVEM  FLQS
Subjt:  GT------GGDLAESETVSMPVEMR-FLQS

XP_022985461.1 nuclear transcription factor Y subunit C-4-like [Cucurbita maxima]1.3e-5285.61Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELFIEELTKRSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIFHET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  GT--------GGDLAESETVSMPVEMR-FLQS
         T         GDL ESET+S+P+EMR FLQS
Subjt:  GT--------GGDLAESETVSMPVEMR-FLQS

XP_023552994.1 nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]1.8e-5489.92Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIFHET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  GT-----GGDLAESETVSMPVEMR-FLQS
         T      GDLAESET+S+PVEMR FLQS
Subjt:  GT-----GGDLAESETVSMPVEMR-FLQS

TrEMBL top hitse value%identityAlignment
A0A0A0KZN6 CBFD_NFYB_HMF domain-containing protein4.6e-5191.45Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  GT---GGDLAESETVSM
         T    GDL ESET+S+
Subjt:  GT---GGDLAESETVSM

A0A5A7TSI3 Nuclear transcription factor Y subunit C-1-like1.3e-5091.3Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIF+ET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  -GTGGDLAESETVSM
          T GD+ ESE +S+
Subjt:  -GTGGDLAESETVSM

A0A6J1C6K6 nuclear transcription factor Y subunit C-1-like4.1e-5287.5Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGV+YWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELT+RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE 
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  GTGGDLAESETVSMPVEMRF
         + G++A+  TVSMP+EM F
Subjt:  GTGGDLAESETVSMPVEMRF

A0A6J1EZM2 nuclear transcription factor Y subunit C-4-like4.1e-5285.38Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELTKRSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIFHET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  GT------GGDLAESETVSMPVEMR-FLQS
         T        +L ESET+S+PVEM  FLQS
Subjt:  GT------GGDLAESETVSMPVEMR-FLQS

A0A6J1J883 nuclear transcription factor Y subunit C-4-like6.4e-5385.61Show/hide
Query:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET
        MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELFIEELTKRSWMIAM SKKRMLHKEDVASAILATD+FDFLIGLIFHET
Subjt:  MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHET

Query:  GT--------GGDLAESETVSMPVEMR-FLQS
         T         GDL ESET+S+P+EMR FLQS
Subjt:  GT--------GGDLAESETVSMPVEMR-FLQS

SwissProt top hitse value%identityAlignment
A6BLW4 Nuclear transcription factor Y subunit C-21.6e-2163.41Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE
        H LPLARIKKIM K+ EDV+MIS EAP++F+KACELFI ELT RSW+ A ++K+R L + DVA+AI  TDVFDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE

Q655V5 Nuclear transcription factor Y subunit C-49.5e-2251.92Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FHETGTGGDLAESETVS
        HSLPLARIKKIM K+ EDV+MIS EAP++F+KACE+FI ELT RSWM   ++K+R L K D+A+AI  TD++DFL+ ++      E G G   A    + 
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FHETGTGGDLAESETVS

Query:  MPVE
        +P +
Subjt:  MPVE

Q9FMV5 Nuclear transcription factor Y subunit C-49.5e-2263.41Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE

Q9SMP0 Nuclear transcription factor Y subunit C-11.2e-2164.56Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

Q9ZVL3 Nuclear transcription factor Y subunit C-33.6e-2153Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FHETGTGGDLAESETVS
        HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++      +   GG  AE+ T +
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FHETGTGGDLAESETVS

Arabidopsis top hitse value%identityAlignment
AT1G08970.4 nuclear factor Y, subunit C92.6e-2254.08Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGTGGDLAESETVSMP
        HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++  E     DL +    S+P
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGTGGDLAESETVSMP

AT1G54830.2 nuclear factor Y, subunit C32.6e-2253Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FHETGTGGDLAESETVS
        HSLPLARIKKIM K+ EDV+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K D+A+A+  TD+FDFL+ ++      +   GG  AE+ T +
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI----FHETGTGGDLAESETVS

AT3G48590.1 nuclear factor Y, subunit C18.8e-2364.56Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLI

AT5G63470.1 nuclear factor Y, subunit C46.8e-2363.41Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE

AT5G63470.2 nuclear factor Y, subunit C46.8e-2363.41Show/hide
Query:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE
        H LPLARIKKIM K+ EDV+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K D+A+AI  TD+FDFL+ ++  E
Subjt:  HSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAAGCGGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCGCTGCCGTTGGCGAGGATCAAGAAGATCATGAAGAAATCCGGCGAGGACGTGAA
GATGATTTCCGGCGAGGCTCCGATCGTCTTCTCGAAGGCGTGTGAGCTCTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGC
TTCACAAAGAGGATGTCGCTTCCGCGATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCCATGAAACCGGCACCGGCGGCGATCTTGCTGAAAGTGAA
ACTGTGTCCATGCCTGTGGAGATGAGGTTCTTGCAGTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAAGCGGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCGCTGCCGTTGGCGAGGATCAAGAAGATCATGAAGAAATCCGGCGAGGACGTGAA
GATGATTTCCGGCGAGGCTCCGATCGTCTTCTCGAAGGCGTGTGAGCTCTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGC
TTCACAAAGAGGATGTCGCTTCCGCGATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCCATGAAACCGGCACCGGCGGCGATCTTGCTGAAAGTGAA
ACTGTGTCCATGCCTGTGGAGATGAGGTTCTTGCAGTCCTGA
Protein sequenceShow/hide protein sequence
MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFHETGTGGDLAESE
TVSMPVEMRFLQS