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Tan0013420 (gene) of Snake gourd v1 genome

Gene IDTan0013420
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRoot meristem growth factor 6
Genome locationLG01:22957952..22958865
RNA-Seq ExpressionTan0013420
SyntenyTan0013420
Gene Ontology termsNA
InterPro domainsIPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028383.1 Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma]8.1e-3470.54Show/hide
Query:  MAMP-SLLLILLFLSTLLHACDARRLPFFVTSRLELRSISQEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPV----KDKDKDKVVN
        M MP SL L LLFLST LHACDAR L    +SRLE   IS  F+ +Q E+S D+++S+ +SSME VGIEILKGMKK +RL MELPV    +DKD DKVVN
Subjt:  MAMP-SLLLILLFLSTLLHACDARRLPFFVTSRLELRSISQEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPV----KDKDKDKVVN

Query:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP
        SEENEVGEDMVVMDYAQPHRKPPIHNQKP
Subjt:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP

XP_023005579.1 uncharacterized protein LOC111498521 [Cucurbita maxima]1.9e-3571.76Show/hide
Query:  MAMP-SLLLILLFLSTLLHACDARRLPFFVTSRLELRSISQEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPV------KDKDKDKV
        M MP SL L LLFLST LHACDAR L    +SRLE   IS  F+MDQ +RS DK+KS+++SS+E VGIEILKGMKK +RL MELPV      KDKD DKV
Subjt:  MAMP-SLLLILLFLSTLLHACDARRLPFFVTSRLELRSISQEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPV------KDKDKDKV

Query:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        VNSEENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]2.1e-3470.54Show/hide
Query:  MAMP-SLLLILLFLSTLLHACDARRLPFFVTSRLELRSISQEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPVKDKDK----DKVVN
        M MP S  L LLFLST LHACDAR L    +SRLE   IS  F+ +Q ERS D++KS+ +SSME VGIEILKGMKK +RL MELPV+D+D+    DKVVN
Subjt:  MAMP-SLLLILLFLSTLLHACDARRLPFFVTSRLELRSISQEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPVKDKDK----DKVVN

Query:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP
        SEENEVGEDMVVMDYAQPHRKPPIHNQKP
Subjt:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP

XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]6.0e-2965.89Show/hide
Query:  MPSLLLILLFLSTLLHACDARRLPFF----VTSRLELRSISQEFQMDQPERSFDKNKSDKISSME-IVGIEILK-GMKKH-KRLVMELPVKDKDKDKVVN
        MP L LILL  S+ LHAC+AR L FF      SR+E  SISQ    DQPERSF+++ SDK+S  E IVGIE+LK GMKKH  RLVME P+    K+KV+N
Subjt:  MPSLLLILLFLSTLLHACDARRLPFF----VTSRLELRSISQEFQMDQPERSFDKNKSDKISSME-IVGIEILK-GMKKH-KRLVMELPVKDKDKDKVVN

Query:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP
        S+ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  SEENEVGEDMVVMDYAQPHRKPPIHNQKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]2.4e-3066.41Show/hide
Query:  MPSLLLILLFLSTLLHACDARRLPFF----VTSRLELRSISQEFQMDQPERSFDKNKSDKISSME-IVGIEILKGMKKH-KRLVMELPVKDKDKDKVVNS
        MP L LILL  S+ LHAC+AR L FF      SR+E  SISQ    DQPERSF+++ SDK+S  E IVGIE+LKGMKKH  RLVME P+    K+KV+NS
Subjt:  MPSLLLILLFLSTLLHACDARRLPFF----VTSRLELRSISQEFQMDQPERSFDKNKSDKISSME-IVGIEILKGMKKH-KRLVMELPVKDKDKDKVVNS

Query:  EENEVGEDMVVMDYAQPHRKPPIHNQKP
        +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  EENEVGEDMVVMDYAQPHRKPPIHNQKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein3.9e-2660.74Show/hide
Query:  MAMPSLLLILLFLSTLLHACDARRLPFFVTSRL-----ELRSISQ---EFQMDQPERSFDKNKSDKI--SSMEIVGIEILKGMKKH-KRLVMELPVKDKD
        MAMP   LILLF S+ LHACDA RL FF +S       EL S+SQ       DQ E SFDKN +D I  +   I+GIE+LKGMK+   RLVME P+    
Subjt:  MAMPSLLLILLFLSTLLHACDARRLPFFVTSRL-----ELRSISQ---EFQMDQPERSFDKNKSDKI--SSMEIVGIEILKGMKKH-KRLVMELPVKDKD

Query:  KDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        K+KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  KDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

A0A438K320 Uncharacterized protein2.2e-0838.58Show/hide
Query:  SLLLILLFLSTLLHACDARRLPFFVTSRLELRSIS-------QEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPVKDKDKDKVVNSE
        S LL+LL LS  +HAC+AR L        E+  +S       Q  ++  P R     +    ++ ++   +IL G K+H RL+  L     D ++ V+S+
Subjt:  SLLLILLFLSTLLHACDARRLPFFVTSRLELRSIS-------QEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPVKDKDKDKVVNSE

Query:  ENEVGEDMVVMDYAQPHRKPPIHNQKP
        E ++ ED+VVMDYAQPHRKPPIHN+ P
Subjt:  ENEVGEDMVVMDYAQPHRKPPIHNQKP

A0A6J1DKL1 uncharacterized protein LOC1110213966.0e-2765.38Show/hide
Query:  MAMPSLLLILLFLSTLLHACDA-RRLPFF----VTSRLELRS-ISQEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPVKDKDKDKVV
        MA PSLL ILL LST LHACDA  RL  F      SRL L + I QEF+ DQPERS +KN   K+SS   +GI ILKGMKKHKRL ME  +  K+K+K++
Subjt:  MAMPSLLLILLFLSTLLHACDA-RRLPFF----VTSRLELRS-ISQEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPVKDKDKDKVV

Query:  NSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        + EENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  NSEENEVGEDMVVMDYAQPHRKPPIHNQKP

A0A6J1KZM9 uncharacterized protein LOC1114985219.3e-3671.76Show/hide
Query:  MAMP-SLLLILLFLSTLLHACDARRLPFFVTSRLELRSISQEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPV------KDKDKDKV
        M MP SL L LLFLST LHACDAR L    +SRLE   IS  F+MDQ +RS DK+KS+++SS+E VGIEILKGMKK +RL MELPV      KDKD DKV
Subjt:  MAMP-SLLLILLFLSTLLHACDARRLPFFVTSRLELRSISQEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPV------KDKDKDKV

Query:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP
        VNSEENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  VNSEENEVGEDMVVMDYAQPHRKPPIHNQKP

M1A0Y7 Uncharacterized protein6.9e-0745.83Show/hide
Query:  DKNKSDKISSMEIVGIEILKGMKKHKRLVMELPVKDKDKDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQK
        ++NK +K+      G ++ K  ++  RL++E P+  + +++ VNS E E+ ED+VVMDYAQPHRKPPIHN K
Subjt:  DKNKSDKISSMEIVGIEILKGMKKHKRLVMELPVKDKDKDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQK

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 11.8e-0479.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNQK
        E GE++VVMDY QPHRKPPIHN+K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNQK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).1.3e-0579.17Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNQK
        E GE++VVMDY QPHRKPPIHN+K
Subjt:  EVGEDMVVMDYAQPHRKPPIHNQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGCCTTCTTTGCTTCTCATTCTTCTATTCTTGTCAACTCTTTTGCATGCATGTGATGCTCGTCGTCTTCCATTCTTTGTGACTTCAAGGCTTGAACTACGTTC
GATCTCTCAAGAATTTCAGATGGATCAACCTGAGAGAAGTTTCGACAAAAATAAAAGTGATAAGATTTCTTCAATGGAGATTGTTGGGATTGAAATATTAAAGGGAATGA
AGAAGCACAAAAGGTTGGTAATGGAGCTTCCAGTGAAAGACAAAGACAAAGACAAAGTCGTGAACTCTGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTAT
GCACAACCCCACAGGAAACCTCCTATTCACAATCAAAAACCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATGCCTTCTTTGCTTCTCATTCTTCTATTCTTGTCAACTCTTTTGCATGCATGTGATGCTCGTCGTCTTCCATTCTTTGTGACTTCAAGGCTTGAACTACGTTC
GATCTCTCAAGAATTTCAGATGGATCAACCTGAGAGAAGTTTCGACAAAAATAAAAGTGATAAGATTTCTTCAATGGAGATTGTTGGGATTGAAATATTAAAGGGAATGA
AGAAGCACAAAAGGTTGGTAATGGAGCTTCCAGTGAAAGACAAAGACAAAGACAAAGTCGTGAACTCTGAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTAT
GCACAACCCCACAGGAAACCTCCTATTCACAATCAAAAACCTTAA
Protein sequenceShow/hide protein sequence
MAMPSLLLILLFLSTLLHACDARRLPFFVTSRLELRSISQEFQMDQPERSFDKNKSDKISSMEIVGIEILKGMKKHKRLVMELPVKDKDKDKVVNSEENEVGEDMVVMDY
AQPHRKPPIHNQKP