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Tan0013448 (gene) of Snake gourd v1 genome

Gene IDTan0013448
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRAB6-interacting golgin
Genome locationLG08:30074980..30077829
RNA-Seq ExpressionTan0013448
SyntenyTan0013448
Gene Ontology termsGO:0005794 - Golgi apparatus (cellular component)
InterPro domainsIPR007033 - RAB6-interacting golgin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008461743.1 PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo]1.8e-6886.44Show/hide
Query:  MTTPKQSWEAQQSQMQRVK---------NNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRK
        MTT KQSWEAQ  QMQRVK         NN IGSPLKEDQ+EE+SRSA ALFRAKEEEIERKKMEMR+KVEARLGRAEEATKRLAEIREELEGM DPMRK
Subjt:  MTTPKQSWEAQQSQMQRVK---------NNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRK

Query:  EVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH
        EVSFIRKKIDLVNKELKPLGLTC KKEREYKEVL+LFNEKN+EKSQL++KLMELVNESEKLRM+KLEELSKNIDILH
Subjt:  EVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH

XP_022142637.1 uncharacterized protein LOC111012700 [Momordica charantia]2.0e-7291.53Show/hide
Query:  MTTPKQSWE--AQQSQMQRVKN-------NAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRK
        MTT KQSWE  AQQSQMQRV+N       NAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELE MADPMRK
Subjt:  MTTPKQSWE--AQQSQMQRVKN-------NAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRK

Query:  EVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH
        EVSFIRKKIDLVNKELKPLGLTC KKEREYKEVLELFNEKN+EKSQL+AKLMELVNESEKLRMKKLEELSKNIDILH
Subjt:  EVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH

XP_022930056.1 uncharacterized protein LOC111436527 [Cucurbita moschata]4.0e-6889.29Show/hide
Query:  MTTPKQSWEAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKI
        MTT KQSWEAQQSQMQ+    AIGSP +EDQ+EELSRSA ALFRAKEEEIERKKMEMR+KVE RLGRAEEATKRLAEIREELEGM DPMRKEVS IRKKI
Subjt:  MTTPKQSWEAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKI

Query:  DLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH
        DLVNKELKPLG+TC KKEREYKEVLEL NEKNKEKSQLIAKLMELVNESEKLRMKKLEELS NIDILH
Subjt:  DLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH

XP_022970344.1 uncharacterized protein LOC111469338 [Cucurbita maxima]5.2e-6888.69Show/hide
Query:  MTTPKQSWEAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKI
        MTT KQSWEAQQSQMQ+    AIGSP +EDQ+EELSRSA ALFRAKEEEIERKKMEMR+KVE RLGRAEEATKRLAEIREELEGM DPMRKEVS IRKKI
Subjt:  MTTPKQSWEAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKI

Query:  DLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH
        DLVNKELKPLG+TC KKEREYKEVLEL NEKNKEKSQL+AKLMELVNESEKLRMKKLEELS NIDILH
Subjt:  DLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH

XP_038893849.1 uncharacterized protein LOC120082661 [Benincasa hispida]2.9e-7188.76Show/hide
Query:  MTTPKQSWEAQQS-QMQRVKN---------NAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMR
        MTTPKQSWEAQQS QMQRVKN         NAIGSP+KEDQ+EE+SRSA A+FRAKEEEIERKKMEMR+KVEARLGRAEEATKRLAEIREELEGM DPMR
Subjt:  MTTPKQSWEAQQS-QMQRVKN---------NAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMR

Query:  KEVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH
        KEVSFIRKKIDLVNKELKPLGLTC KKEREYKEVL+LFNEKNKEKSQL+AKLMELVNESEKLRMKKLEELSKNIDILH
Subjt:  KEVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH

TrEMBL top hitse value%identityAlignment
A0A1S3CFV6 RAB6-interacting golgin8.6e-6986.44Show/hide
Query:  MTTPKQSWEAQQSQMQRVK---------NNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRK
        MTT KQSWEAQ  QMQRVK         NN IGSPLKEDQ+EE+SRSA ALFRAKEEEIERKKMEMR+KVEARLGRAEEATKRLAEIREELEGM DPMRK
Subjt:  MTTPKQSWEAQQSQMQRVK---------NNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRK

Query:  EVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH
        EVSFIRKKIDLVNKELKPLGLTC KKEREYKEVL+LFNEKN+EKSQL++KLMELVNESEKLRM+KLEELSKNIDILH
Subjt:  EVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH

A0A5D3CH78 RAB6-interacting golgin8.6e-6986.44Show/hide
Query:  MTTPKQSWEAQQSQMQRVK---------NNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRK
        MTT KQSWEAQ  QMQRVK         NN IGSPLKEDQ+EE+SRSA ALFRAKEEEIERKKMEMR+KVEARLGRAEEATKRLAEIREELEGM DPMRK
Subjt:  MTTPKQSWEAQQSQMQRVK---------NNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRK

Query:  EVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH
        EVSFIRKKIDLVNKELKPLGLTC KKEREYKEVL+LFNEKN+EKSQL++KLMELVNESEKLRM+KLEELSKNIDILH
Subjt:  EVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH

A0A6J1CNF1 RAB6-interacting golgin9.9e-7391.53Show/hide
Query:  MTTPKQSWE--AQQSQMQRVKN-------NAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRK
        MTT KQSWE  AQQSQMQRV+N       NAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELE MADPMRK
Subjt:  MTTPKQSWE--AQQSQMQRVKN-------NAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRK

Query:  EVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH
        EVSFIRKKIDLVNKELKPLGLTC KKEREYKEVLELFNEKN+EKSQL+AKLMELVNESEKLRMKKLEELSKNIDILH
Subjt:  EVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH

A0A6J1EPU7 RAB6-interacting golgin1.9e-6889.29Show/hide
Query:  MTTPKQSWEAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKI
        MTT KQSWEAQQSQMQ+    AIGSP +EDQ+EELSRSA ALFRAKEEEIERKKMEMR+KVE RLGRAEEATKRLAEIREELEGM DPMRKEVS IRKKI
Subjt:  MTTPKQSWEAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKI

Query:  DLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH
        DLVNKELKPLG+TC KKEREYKEVLEL NEKNKEKSQLIAKLMELVNESEKLRMKKLEELS NIDILH
Subjt:  DLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH

A0A6J1I589 RAB6-interacting golgin2.5e-6888.69Show/hide
Query:  MTTPKQSWEAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKI
        MTT KQSWEAQQSQMQ+    AIGSP +EDQ+EELSRSA ALFRAKEEEIERKKMEMR+KVE RLGRAEEATKRLAEIREELEGM DPMRKEVS IRKKI
Subjt:  MTTPKQSWEAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKI

Query:  DLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH
        DLVNKELKPLG+TC KKEREYKEVLEL NEKNKEKSQL+AKLMELVNESEKLRMKKLEELS NIDILH
Subjt:  DLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27740.1 Family of unknown function (DUF662)2.2e-4861.99Show/hide
Query:  MTTPKQSWEAQQSQ-MQRVKNNA----IGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSF
        M T +Q  E  QS  +QR+K++      GSP+ ++++EELS+SAFALF+AKE+EIER+KME++D+V+ +LG AEEAT+RLAEIREELE + DPMRKE+S 
Subjt:  MTTPKQSWEAQQSQ-MQRVKNNA----IGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSF

Query:  IRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDI
        IRK++D +N+ELKPLG +C +KERE+KE LE +NEKNKEK+  ++KL+ELV ESEKLRM KLEELSK+I+I
Subjt:  IRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDI

AT2G36410.2 Family of unknown function (DUF662)1.9e-4460.82Show/hide
Query:  TTPKQSWEAQQSQMQRVKNNAI-------GSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVS
        + P Q     Q Q Q+  N  +        S     +DEE++RSA + FRAKE+EIE+++ME+R++++A+LGR E+ TKRL+ IREELE MADPMRKEVS
Subjt:  TTPKQSWEAQQSQMQRVKNNAI-------GSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVS

Query:  FIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNID
         +RKKID VNKELKPLG T  KKEREYKE L+ FNEKN+EK QLI KLMELV ESEKLRM KLEELSK+I+
Subjt:  FIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNID

AT3G09980.1 Family of unknown function (DUF662)1.5e-4976.09Show/hide
Query:  QDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNE
        +DEE+SR+A + FRAKEEEIE+KKME+R++V+A+LGR EE TKRLA IREELEG+ADPMRKEV+ +RKKID VNKELKPLG T  KKEREYKE LE FNE
Subjt:  QDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKIDLVNKELKPLGLTCHKKEREYKEVLELFNE

Query:  KNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH
        KN+EK QLI +LMELV ESEK+RMKKLEELSKNID +H
Subjt:  KNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH

AT3G52920.1 Family of unknown function (DUF662)5.6e-4463.75Show/hide
Query:  EAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKIDLVNKELK
        EA     Q++ + +  S + + +DEE++RSA + FRAKE+EIE++KME+R++V+A+LGR EE T+RLA IREELE MADPMRKEV+++RKKID VNKELK
Subjt:  EAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKIDLVNKELK

Query:  PLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLME---LVNESEKLRMKKLEELSKNID
        PLG T  KKEREYKE L+ FNEKN+EK QLI KLME   LV ESEKLR+KKL+ELS++ID
Subjt:  PLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLME---LVNESEKLRMKKLEELSKNID

AT3G52920.2 Family of unknown function (DUF662)1.3e-4564.97Show/hide
Query:  EAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKIDLVNKELK
        EA     Q++ + +  S + + +DEE++RSA + FRAKE+EIE++KME+R++V+A+LGR EE T+RLA IREELE MADPMRKEV+++RKKID VNKELK
Subjt:  EAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKIDLVNKELK

Query:  PLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNID
        PLG T  KKEREYKE L+ FNEKN+EK QLI KLMELV ESEKLR+KKL+ELS++ID
Subjt:  PLGLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGACGCCAAAACAGAGTTGGGAAGCGCAACAATCGCAGATGCAGAGAGTGAAGAATAATGCGATTGGGAGTCCGTTGAAGGAGGATCAAGACGAGGAGCTTTCACG
ATCGGCCTTCGCTCTGTTCCGCGCCAAGGAAGAGGAGATCGAGAGGAAGAAGATGGAGATGAGAGACAAGGTGGAGGCTCGCCTTGGACGAGCTGAAGAAGCCACGAAGC
GATTGGCGGAGATTCGCGAAGAGCTTGAAGGAATGGCGGATCCGATGAGGAAAGAAGTTTCGTTTATCCGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTG
GGACTCACCTGTCATAAGAAGGAGAGAGAATACAAAGAAGTCCTAGAGCTATTTAATGAGAAGAACAAAGAGAAGTCTCAATTGATAGCCAAGCTAATGGAGTTGGTGAA
TGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAAGAACATTGACATCCTTCATTAA
mRNA sequenceShow/hide mRNA sequence
CTTTTAAAGCGAAGCCCAGCTGACCTAACGGAGCGAGAAGCGAGAGAGGCCGTGAGTATGACGACGCCAAAACAGAGTTGGGAAGCGCAACAATCGCAGATGCAGAGAGT
GAAGAATAATGCGATTGGGAGTCCGTTGAAGGAGGATCAAGACGAGGAGCTTTCACGATCGGCCTTCGCTCTGTTCCGCGCCAAGGAAGAGGAGATCGAGAGGAAGAAGA
TGGAGATGAGAGACAAGGTGGAGGCTCGCCTTGGACGAGCTGAAGAAGCCACGAAGCGATTGGCGGAGATTCGCGAAGAGCTTGAAGGAATGGCGGATCCGATGAGGAAA
GAAGTTTCGTTTATCCGGAAGAAGATTGATTTGGTGAACAAAGAGTTGAAGCCATTGGGACTCACCTGTCATAAGAAGGAGAGAGAATACAAAGAAGTCCTAGAGCTATT
TAATGAGAAGAACAAAGAGAAGTCTCAATTGATAGCCAAGCTAATGGAGTTGGTGAATGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAAGAACATTG
ACATCCTTCATTAAGAAAAGTGTTCTTCTAACTCAAAATAACCAACTTTGTTTGTATTTCAACAATTTGTTTCTCTTTTTCCTGAAGTTTTCTATGAAAAAAGAGAGGGA
GAG
Protein sequenceShow/hide protein sequence
MTTPKQSWEAQQSQMQRVKNNAIGSPLKEDQDEELSRSAFALFRAKEEEIERKKMEMRDKVEARLGRAEEATKRLAEIREELEGMADPMRKEVSFIRKKIDLVNKELKPL
GLTCHKKEREYKEVLELFNEKNKEKSQLIAKLMELVNESEKLRMKKLEELSKNIDILH