CuGenDBv2

Gene ID	Tan0013476
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Nucleolar protein 16
Genome location	LG06:6744681..6746153
RNA-Seq Expression	Tan0013476
Synteny	Tan0013476
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7014368.1 hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-91

90.16

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVE+D LQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP

Query:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
              +GSDVEEDDLKTALGKKR+ GKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

XP_022954094.1 uncharacterized protein LOC111456462 [Cucurbita moschata]

2.0e-92

90.67

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVE+D LQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP

Query:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
              +GSDVEEDDLKTALGKKR+DGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

1.8e-93

91.71

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVE+DSLQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP

Query:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
              +GSDVEEDDLKTALGKKRKDGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

6.8e-93

91.19

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVE+DSLQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP

Query:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
              +GSDVEEDDLKTALGKKRKDGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYH CLDKNPLIL R
Subjt:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

XP_038898931.1 nucleolar protein 16 [Benincasa hispida]

1.5e-95

92.23

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP
        MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDP+WD+KA VIHNYKSFGV+SNPNLLSVRSRTDHIVE+DSLQVPPSQPPSD+P
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP

Query:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
              +GSDVEEDDLKTALGKKRKDGKS PL+PLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
Subjt:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BSM4 Nucleolar protein 16

4.4e-90

88.89

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSD--
        MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVE+DSLQVPPS  P    
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSD--

Query:  DPAGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        D +GSDVEEDDLKTALGKKRKDGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  DPAGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

A0A5A7VLA5 Nucleolar protein 16

4.4e-90

88.89

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSD--
        MGRSRRKYK+SRPKVKVGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVE+DSLQVPPS  P    
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSD--

Query:  DPAGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        D +GSDVEEDDLKTALGKKRKDGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  DPAGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

A0A6J1GRW5 Nucleolar protein 16

9.6e-93

90.67

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVE+D LQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP

Query:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
              +GSDVEEDDLKTALGKKR+DGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

A0A6J1H6M6 Nucleolar protein 16

3.8e-89

91.01

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSD--
        MGRSRRKYKRSRPKV+VGLPKRHPNVFKPSFCMPPKLRSLL EQFEEDP+WDEKASVI+NYKSFGVLSNPNLLSVRSRTDHIVE+DSLQVP SQ PSD  
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSD--

Query:  DPAGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
        D +GSDVEEDDLKTALGKKR+DGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSV TLEKLCKRYHS   KNPLIL R
Subjt:  DPAGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

A0A6J1JMQ4 Nucleolar protein 16

8.6e-94

91.71

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP
        MGRSRRKYKRSR KV+VGLPKR+PNVFKPSFCMPPKLRSLLAEQFEEDP+WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVE+DSLQVPPS PPSDDP
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDP

Query:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR
              +GSDVEEDDLKTALGKKRKDGKS PLKPLTTIQRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL R
Subjt:  ------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

2.0e-66

62.56

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Query:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPS-QPPSDD
        M RSRRKY+ SR KV+V LPK++PN+FKP+F  PPKLR+L+    ++ P WD++ASVI NYKSFGV+SNPNLL +R+RTDH++++DSL VPP  +PP+DD
Subjt:  MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPS-QPPSDD

Query:  P---------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL
        P         +GS++EEDDLKTALGK+RKDGKS PL+PLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSVATL KLC RY    DKNP+++
Subjt:  P---------AGSDVEEDDLKTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLIL

Sequences

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CDS sequence

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ATGGGAAGGTCTCGAAGAAAGTACAAGAGATCTCGGCCAAAAGTCAAGGTCGGCCTGCCCAAAAGACACCCCAATGTTTTCAAGCCATCCTTCTGCATGCCGCCGAAGCT
TCGCTCCTTGCTCGCCGAACAATTTGAAGAGGATCCCTCATGGGACGAGAAAGCCAGTGTCATTCACAACTACAAGTCCTTCGGTGTTCTTTCTAACCCTAATTTGCTCA
GCGTTCGCTCCCGCACTGATCACATCGTTGAGAACGACTCTCTCCAGGTCCCGCCGTCTCAGCCACCTTCCGATGACCCTGCCGGTAGCGATGTGGAAGAAGACGATTTG
AAAACAGCACTGGGAAAGAAGCGCAAAGATGGGAAATCTGGACCTCTAAAGCCATTGACCACGATTCAGCGTGTTCATGTCGGTAGGCTAATCGAGAAATATGGAGACGA
TTATGAGAGGATGTTCATGGATACAAAGCTGAACTCAATGCAGCACTCTGTTGCCACTCTGGAGAAACTATGCAAAAGATATCACAGTTGTTTAGATAAGAATCCATTGA
TATTGATTCGTTAA

mRNA sequence

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Protein sequence

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MGRSRRKYKRSRPKVKVGLPKRHPNVFKPSFCMPPKLRSLLAEQFEEDPSWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVENDSLQVPPSQPPSDDPAGSDVEEDDL
KTALGKKRKDGKSGPLKPLTTIQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCLDKNPLILIR

Tan0013476 (gene) of Snake gourd v1 genome