; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Tan0013509 (gene) of Snake gourd v1 genome

Gene IDTan0013509
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG02:82053982..82054753
RNA-Seq ExpressionTan0013509
SyntenyTan0013509
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]4.6e-6456.42Show/hide
Query:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM
        M SKK AS   +AAS+TYTGP+TRS S+G+   +D+   AIA  I+K +  S K  +VIK+NPL++ +  A S+S + ++ DVM VM+ADV  +  MAEM
Subjt:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM

Query:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID
        ERKI+LLM  V+ERD EIA LK QMQ RETAES                                     +MI SSIRAQYGGP+Q   MY KPYTKRID
Subjt:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD
        NLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCENAG+RGD LV+QFVR+LKGNAF+
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]4.6e-6456.42Show/hide
Query:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM
        M SKK AS   +AAS+TYTGP+TRS S+G+   +D+   AIA  I+K +  S K  +VIK+NPL++ +  A S+S + ++ DVM VM+ADV  +  MAEM
Subjt:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM

Query:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID
        ERKI+LLM  V+ERD EIA LK QMQ RETAES                                     +MI SSIRAQYGGP+Q   MY KPYTKRID
Subjt:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD
        NLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCENAG+RGD LV+QFVR+LKGNAF+
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]4.6e-6456.42Show/hide
Query:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM
        M SKK AS   +AAS+TYTGP+TRS S+G+   +D+   AIA  I+K +  S K  +VIK+NPL++ +  A S+S + ++ DVM VM+ADV  +  MAEM
Subjt:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM

Query:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID
        ERKI+LLM  V+ERD EIA LK QMQ RETAES                                     +MI SSIRAQYGGP+Q   MY KPYTKRID
Subjt:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD
        NLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCENAG+RGD LV+QFVR+LKGNAF+
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]4.6e-6456.42Show/hide
Query:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM
        M SKK AS   +AAS+TYTGP+TRS S+G+   +D+   AIA  I+K +  S K  +VIK+NPL++ +  A S+S + ++ DVM VM+ADV  +  MAEM
Subjt:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM

Query:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID
        ERKI+LLM  V+ERD EIA LK QMQ RETAES                                     +MI SSIRAQYGGP+Q   MY KPYTKRID
Subjt:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD
        NLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCENAG+RGD LV+QFVR+LKGNAF+
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD

XP_031744658.1 uncharacterized protein LOC116405107 [Cucumis sativus]4.6e-6456.42Show/hide
Query:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM
        M SKK AS   +AAS+TYTGP+TRS S+G+   +D+   AIA  I+K +  S K  +VIK+NPL++ +  A S+S + ++ DVM VM+ADV  +  MAEM
Subjt:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM

Query:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID
        ERKI+LLM  V+ERD EIA LK QMQ RETAES                                     +MI SSIRAQYGGP+Q   MY KPYTKRID
Subjt:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD
        NLRMP GYQPPKFQQFDGKGNPKQH+AHF+ETCENAG+RGD LV+QFVR+LKGNAF+
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD

TrEMBL top hitse value%identityAlignment
A0A5A7VCU1 Ty3-gypsy retrotransposon protein3.4e-5751.75Show/hide
Query:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM
        M SKK AS   + AS+ YTGP+TR+ S+G+  ++D+ SD +   I+K +  S K  +VIK+N L+D    A S+SK+  + DVM VM+ D+ ++  MAEM
Subjt:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM

Query:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID
        ERKI+ LM  VEERD EI  L+ QMQ RET ES                                     NMI +S RAQYGGP Q   MY K YTKRID
Subjt:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD
        NLRMP GYQPPKFQQFDGKGNPKQHIAHF+ETC+NAG+R D LV+QFVR+LKGN F+
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.1e-6053.7Show/hide
Query:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM
        M SKK AS   + ASN YTGP+TRS S+G+  ++D+ S+ +A  I+K +  S K  +VIK+NPL+D    + S+SK+ ++ DVM VM+AD+  +  MAEM
Subjt:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM

Query:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID
        ERKI+ LM AVEERD EI  L+ QM+ RETAES                                     +MI +SIRAQYGGP Q   MY K YTKRID
Subjt:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD
        NLRMP GYQPPKFQQF+GKGNPKQHIAHF ETCENAG+RGD LV+QFV++LKGNAF+
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD

A0A5D3CD35 Ty3-gypsy retrotransposon protein2.7e-6253.7Show/hide
Query:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM
        M SKK AS   + AS+ YTGP+T SHS+G+  ++D+ S+ +A  I+K +  S K  +VIK+NPL+D F  A S+SK+ ++ DVMFVM+AD+ ++  MA+M
Subjt:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM

Query:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID
        E+KI+ LM A+EE D EI  L+ QM+ RETAES                                     +MI +SIRAQYGGP Q   MY KPYTKRID
Subjt:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-------------------------------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRID

Query:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD
        NLRMP GYQPPKFQQFDGKGNPKQHIAHF+ETC NAG+RGD LV+QFVR+LKGNAF+
Subjt:  NLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD

A0A5D3DHB7 Ty3-gypsy retrotransposon protein5.6e-6058.67Show/hide
Query:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM
        M SKKVAS    A  + YT P+TRS S+G+  ++D+ S+ +A  I+K +  S K  +VIK+NPL+D    A ++SK  ++ +VM VM+AD+ ++  M EM
Subjt:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM

Query:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-----NMIMSSIRAQYGGPTQNCLMYFKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFMET
        ERKI+ LM  VEERD EI  L+ QM+ RE AES     +MI++SIR QYGGP Q   MY KPYTKR DNLR+P GYQPPKFQQFDGKGNPKQHIAHF+ET
Subjt:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES-----NMIMSSIRAQYGGPTQNCLMYFKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFMET

Query:  CENAGTRGDLLVKQFVRTLKGNAFD
        CENAG+RGD LV+QFVR+LKGNAF+
Subjt:  CENAGTRGDLLVKQFVRTLKGNAFD

A0A5D3DXA8 Ty3-gypsy retrotransposon protein1.5e-5755.32Show/hide
Query:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM
        M SKKVAS   + AS+ YTGP+T S  +G+  ++D+ S+ +A  I+K +  S K  +VIK+NPL+D    A S+SK+ ++ DVM +M+AD+  +  MAEM
Subjt:  MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEM

Query:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES---------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRIDNLRMPTGYQPPKFQQFDGKGNP
        ERKI+ LM  VEER+ EI  L+ QM  RETAES               +MI +SI+AQYGGP Q    Y K YTKRID+LRMP GYQPPKFQQFD KGNP
Subjt:  ERKISLLMNAVEERDLEIAYLKNQMQNRETAES---------------NMIMSSIRAQYGGPTQNCLMYFKPYTKRIDNLRMPTGYQPPKFQQFDGKGNP

Query:  KQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD
        KQHIAHF+ETCE AG+RG  LV+QFVR+LKGNAF+
Subjt:  KQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCAAAGAAGGTTGCATCAACTGTTGTTGCTGCTGCAAGCAACACCTATACAGGGCCAGTAACACGTAGTCATTCTCGGGGGGTTGAGATAAAGGAGGACCGAAT
CTCCGATGCGATTGCAAGCAAGATCGTCAAGTTGATCGAAGGATCCTCCAAGGATAGAGTGGTCATCAAAGATAACCCACTATTTGACCAGTTTACCCCCGCTGTCAGTC
AATCAAAGGAGACATCGAATCAAGATGTGATGTTTGTGATGATTGCCGATGTGGAATCCGACGAAAGGATGGCGGAGATGGAGAGAAAGATTAGTCTCCTGATGAATGCA
GTCGAAGAAAGGGATCTAGAGATTGCCTACTTGAAGAATCAAATGCAGAATCGCGAGACTGCTGAGTCAAATATGATTATGAGCTCCATTAGAGCTCAATATGGCGGGCC
TACTCAGAATTGTCTGATGTATTTCAAACCATACACCAAGAGAATCGATAACTTGAGGATGCCCACAGGATACCAACCTCCTAAGTTCCAACAGTTCGATGGGAAAGGTA
ACCCGAAGCAGCATATCGCTCACTTTATGGAAACATGCGAGAATGCTGGGACTCGCGGCGACCTTCTAGTGAAACAATTTGTTCGTACGCTGAAAGGGAATGCCTTTGAC
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATCAAAGAAGGTTGCATCAACTGTTGTTGCTGCTGCAAGCAACACCTATACAGGGCCAGTAACACGTAGTCATTCTCGGGGGGTTGAGATAAAGGAGGACCGAAT
CTCCGATGCGATTGCAAGCAAGATCGTCAAGTTGATCGAAGGATCCTCCAAGGATAGAGTGGTCATCAAAGATAACCCACTATTTGACCAGTTTACCCCCGCTGTCAGTC
AATCAAAGGAGACATCGAATCAAGATGTGATGTTTGTGATGATTGCCGATGTGGAATCCGACGAAAGGATGGCGGAGATGGAGAGAAAGATTAGTCTCCTGATGAATGCA
GTCGAAGAAAGGGATCTAGAGATTGCCTACTTGAAGAATCAAATGCAGAATCGCGAGACTGCTGAGTCAAATATGATTATGAGCTCCATTAGAGCTCAATATGGCGGGCC
TACTCAGAATTGTCTGATGTATTTCAAACCATACACCAAGAGAATCGATAACTTGAGGATGCCCACAGGATACCAACCTCCTAAGTTCCAACAGTTCGATGGGAAAGGTA
ACCCGAAGCAGCATATCGCTCACTTTATGGAAACATGCGAGAATGCTGGGACTCGCGGCGACCTTCTAGTGAAACAATTTGTTCGTACGCTGAAAGGGAATGCCTTTGAC
TAG
Protein sequenceShow/hide protein sequence
MESKKVASTVVAAASNTYTGPVTRSHSRGVEIKEDRISDAIASKIVKLIEGSSKDRVVIKDNPLFDQFTPAVSQSKETSNQDVMFVMIADVESDERMAEMERKISLLMNA
VEERDLEIAYLKNQMQNRETAESNMIMSSIRAQYGGPTQNCLMYFKPYTKRIDNLRMPTGYQPPKFQQFDGKGNPKQHIAHFMETCENAGTRGDLLVKQFVRTLKGNAFD