CuGenDBv2

Gene ID	Tan0013514
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase
Genome location	LG05:61475028..61475946
RNA-Seq Expression	Tan0013514
Synteny	Tan0013514
Gene Ontology terms	GO:0006260 - DNA replication (biological process) GO:0006351 - transcription, DNA-templated (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0005739 - mitochondrion (cellular component) GO:0000166 - nucleotide binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR002092 - DNA-directed RNA polymerase, phage-type IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CAB4263363.1 unnamed protein product [Prunus armeniaca]

1.8e-40

81.13

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Query:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN
        M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILN
Subjt:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN

Query:  EFIHMN
        EFI+MN
Subjt:  EFIHMN

CAB4289961.1 unnamed protein product [Prunus armeniaca]

1.8e-40

81.13

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Query:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN
        M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILN
Subjt:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN

Query:  EFIHMN
        EFI+MN
Subjt:  EFIHMN

CAB4293876.1 unnamed protein product [Prunus armeniaca]

1.8e-40

81.13

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Query:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN
        M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILN
Subjt:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN

Query:  EFIHMN
        EFI+MN
Subjt:  EFIHMN

KAG6621672.1 hypothetical protein I3842_Q008800, partial [Carya illinoinensis]

2.7e-39

78.3

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Query:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN
        M+PINIWVYD+LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML++  PIYTVHDNFITTA YSN +P  YS  I +MGPPL I+N
Subjt:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN

Query:  EFIHMN
        EFI+MN
Subjt:  EFIHMN

XP_017985382.1 PREDICTED: probable DNA-directed RNA polymerase [Theobroma cacao]

1.7e-38

76.42

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Query:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN
        MEPINIWVYD+LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQ+DA IAM VVE ML  GAPIYTVHDNFI+TA YS+ +P  YS+ IC M PPL ++N
Subjt:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN

Query:  EFIHMN
        EFI+MN
Subjt:  EFIHMN

TrEMBL top hits

e value

%identity

Alignment

A0A101M3N5 DNA-directed RNA polymerase

2.4e-38

78.3

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Query:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN
        M PINIW YD LHKK+ RVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ GAPIYTVHDNFITTA Y++ LP  Y   IC+MGPPL ILN
Subjt:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN

Query:  EFIHMN
        EFI+MN
Subjt:  EFIHMN

A0A6B9XVF7 DNA-directed RNA polymerase

2.4e-38

78.3

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Query:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN
        M PINIW YD LHKK+ RVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ GAPIYTVHDNFITTA Y++ LP  Y   IC+MGPPL ILN
Subjt:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN

Query:  EFIHMN
        EFI+MN
Subjt:  EFIHMN

A0A6J5VPQ6 Multifunctional fusion protein

8.9e-41

81.13

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Query:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN
        M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILN
Subjt:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN

Query:  EFIHMN
        EFI+MN
Subjt:  EFIHMN

A0A6J5VXK4 DNA-directed RNA polymerase

8.9e-41

81.13

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Query:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN
        M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILN
Subjt:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN

Query:  EFIHMN
        EFI+MN
Subjt:  EFIHMN

A0A6J5Y9W3 DNA-directed RNA polymerase

8.9e-41

81.13

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Query:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN
        M+PIN+W YD LHKK+RRVTLRVSS KRDRRKT ISTFVNFIHQRDA IAMKVVE ML+ GAPIYTVHDNFITTA YS FLP  Y   ICEMGPPL ILN
Subjt:  MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILN

Query:  EFIHMN
        EFI+MN
Subjt:  EFIHMN

SwissProt top hits

e value

%identity

Alignment

P10581 Probable DNA-directed RNA polymerase

2.2e-12

41.94

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Query:  KKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELM--LDHGA--PIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFI
        K     + +  +  D RK++ STF NFIHQ+DA  A+++V+ +  L++ +  PIY VHDNFIT   Y++ LP  Y  +I  MG PL I+N+F+
Subjt:  KKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELM--LDHGA--PIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFI

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAACCCATAAATATATGGGTTTATGATAAACTACATAAGAAGAAGCGTCGGGTGACTCTCAGAGTATCTTCTGATAAGAGAGATCGTAGGAAGACAGCAATCTCTAC
CTTCGTCAACTTCATCCATCAGAGGGATGCCTCTATAGCAATGAAAGTCGTTGAATTAATGCTTGATCATGGAGCACCCATATACACTGTACACGACAACTTTATAACAA
CAGCATCATATAGCAATTTTCTTCCTGATTATTATAGCAGCACCATTTGCGAGATGGGTCCTCCACTTCAAATCCTCAACGAGTTCATCCATATGAATAGGAGGCTCATC
CATGATTGGGAATCGGAATGTGGGTACTTGACTGGATGCCCGCCCCCCCCATTGATCTTGGCTTGCTTCATTGCATTCATTCATTCTTTGTTTGATTCTTCGGGCTTCTT
CCGATCCGCTTGA

mRNA sequence

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Protein sequence

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MEPINIWVYDKLHKKKRRVTLRVSSDKRDRRKTAISTFVNFIHQRDASIAMKVVELMLDHGAPIYTVHDNFITTASYSNFLPDYYSSTICEMGPPLQILNEFIHMNRRLI
HDWESECGYLTGCPPPPLILACFIAFIHSLFDSSGFFRSA

Tan0013514 (gene) of Snake gourd v1 genome