CuGenDBv2

Gene ID	Tan0013526
Organism	Trichosanthes anguina (Snake gourd v1)
Description	INO80 complex subunit C
Genome location	LG08:17635243..17645252
RNA-Seq Expression	Tan0013526
Synteny	Tan0013526
Gene Ontology terms	GO:0006338 - chromatin remodeling (biological process) GO:0006468 - protein phosphorylation (biological process) GO:0031011 - Ino80 complex (cellular component) GO:0004672 - protein kinase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR013272 - Vps72/YL1, C-terminal IPR029525 - INO80 complex, subunit Ies6

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008441777.1 PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]

5.7e-64

96.77

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Query:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY NYSPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_022144563.1 INO80 complex subunit C isoform X1 [Momordica charantia]

4.4e-64

96.77

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Query:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP+HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY N+SPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAVILR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_022937916.1 INO80 complex subunit C isoform X1 [Cucurbita moschata]

9.8e-64

96.77

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Query:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP+HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY NYS DEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_031736376.1 INO80 complex subunit C isoform X1 [Cucumis sativus]

4.8e-63

95.97

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Query:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY NYSPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_038889510.1 INO80 complex subunit C isoform X1 [Benincasa hispida]

5.7e-64

96.77

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Query:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY NYSPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJN6 YL1_C domain-containing protein

2.3e-63

95.97

Show/hide

Query:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY NYSPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A1S3B479 INO80 complex subunit C isoform X1

2.8e-64

96.77

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Query:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY NYSPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A6J1CRZ9 INO80 complex subunit C isoform X1

2.1e-64

96.77

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Query:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP+HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY N+SPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAVILR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A6J1FBP9 INO80 complex subunit C isoform X1

4.7e-64

96.77

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Query:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP+HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY NYS DEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A6J1HLV4 INO80 complex subunit C isoform X1

4.7e-64

96.77

Show/hide

Query:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEPEVIEAELVLP+HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY NYS DEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

SwissProt top hits

e value

%identity

Alignment

P32617 Chromatin-remodeling complex subunit IES6

6.0e-08

37.31

Show/hide

Query:  YVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVILR
        Y ++E+PPS+ P KK CD+TG +  Y  P   +RY NA+I++ +++ +     Q YL +R A  +L+
Subjt:  YVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVILR

Q5BJY3 INO80 complex subunit C

6.7e-15

42.86

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Query:  RGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YL +R A  I+
Subjt:  RGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL

Q6PI98 INO80 complex subunit C

6.7e-15

42.86

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Query:  RGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL
        + R WK+LKQIL +E    +  ++PNY +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  I+
Subjt:  RGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL

Q8BHA0 INO80 complex subunit C

1.8e-15

45.05

Show/hide

Query:  RGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL
        + R WK+LKQIL AE    +  ++PNY +I++PPS  P KK  DI+G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  I+
Subjt:  RGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL

Q9UTE8 Chromatin-remodeling complex subunit ies6

1.3e-13

41.24

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Query:  PKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVILR
        P  +++ R  ++L+QI+Q +   N  P + +Y +IE+PPS+ P  K CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ V+L+
Subjt:  PKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVILR

Arabidopsis top hits

e value

%identity

Alignment

AT2G36740.1 sequence-specific DNA binding transcription factors;DNA binding;DNA binding

5.4e-04

54.29

Show/hide

Query:  HPCKKICDITGYEAPYYDPRTTLRYANADIFKVIR
        +P K +C ITG  A Y DP+T L YA  D FK IR
Subjt:  HPCKKICDITGYEAPYYDPRTTLRYANADIFKVIR

AT4G38495.1 CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

2.8e-45

65.32

Show/hide

Query:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        ME E++EA++V+ S L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+P+  PD P YVNIESPPS  PCK++CDITGYEAPY DPRT LRYANA +F+
Subjt:  MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
         +RSL ++ V +YL++RNAAV+L+
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

Sequences

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CDS sequence

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ATGGAGCCCGAGGTGATAGAAGCAGAGTTAGTGTTGCCGTCCCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTACCCCAAAGGCCAATCCAGAGGCAGGCATTG
GAAGCATCTGAAGCAAATTCTTCAAGCCGAGAACTATCCCAACTATTCCCCCGATGAACCCAACTATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAAAA
TCTGTGATATAACAGGATATGAGGCACCATACTATGATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTT
CAGAGGTATTTGGCCATGAGAAATGCAGCAGTAATTTTAAGGTGA

mRNA sequence

Show/hide mRNA sequence

CTTTTTTCCGCTAATCGAATCGGATATTGTTTCTCTCAATTTTCTCACGGTCGAACTGATTATAACCGTTAGGGTTTCTGCTTCTTCTATAGAGCTGTTTCTTTAAAATT
TCTTCAAATTTTGAATGTAACAAAATATTTCAGAAATCAGAAGGCATTTAAGTGGGTATTAATAAAAGTTGAAGATGGAGCCCGAGGTGATAGAAGCAGAGTTAGTGTTG
CCGTCCCACCTGAATTTCAAGCGAATTCAAATGTACGAGAAGTACCCCAAAGGCCAATCCAGAGGCAGGCATTGGAAGCATCTGAAGCAAATTCTTCAAGCCGAGAACTA
TCCCAACTATTCCCCCGATGAACCCAACTATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAAAATCTGTGATATAACAGGATATGAGGCACCATACTATG
ATCCCAGGACTACTCTTCGATATGCAAATGCTGATATCTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTTCAGAGGTATTTGGCCATGAGAAATGCAGCAGTAATT
TTAAGGTGATGATATACTACATTTCTGTTGTCGATTCACTCGACATCTTTTTCGTCTTGCAACCTGTCAACAGATATAAACAGGAAGCAGTAAGCTTTCCATCTCATCGC
TGAAAATGCAGTGTGAAAACTGTTATGCATGCTTAAAATGTATTATATGTCTATTGGTTCAATCATTTTTTGTATTTAATCATTTTGGCAATTTATGATTGCCTTGGGAA
CTAATAGCGAAAGTCGATTCAGTTGGTTAAAACTCTCCTTGCTACAAATACAAACACCCCTGATGG

Protein sequence

Show/hide protein sequence

MEPEVIEAELVLPSHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYPNYSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYV
QRYLAMRNAAVILR

Tan0013526 (gene) of Snake gourd v1 genome