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Tan0013543 (gene) of Snake gourd v1 genome

Gene IDTan0013543
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG05:17985449..17986673
RNA-Seq ExpressionTan0013543
SyntenyTan0013543
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG54824.1 hypothetical protein EZV62_020080 [Acer yangbiense]6.4e-1130.48Show/hide
Query:  MAESNIFKKLEGLNLAEERTWGIVEIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSKIWN-----------IESPISFDRA-----ELKGIHKI
        M+   I    E L++AEE    ++E  + +IED ++  +  LV KVLT + V  E F+S++ +IW+           +E P            +K    I
Subjt:  MAESNIFKKLEGLNLAEERTWGIVEIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSKIWN-----------IESPISFDRA-----ELKGIHKI

Query:  SELEFRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQEC----EESHLAQGGDLPFGSWLR----EPSIWKGSSQNRGLEEVKSHVGRVSTQV
        S+   RR +R KLG   E     + YE+LP+ C+ CG++GHGI EC          +     +G+WL+    E   ++ +SQ     E  S  GR ST+ 
Subjt:  SELEFRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQEC----EESHLAQGGDLPFGSWLR----EPSIWKGSSQNRGLEEVKSHVGRVSTQV

Query:  VEARRGRGRG
          +R G G G
Subjt:  VEARRGRGRG

TXG60914.1 hypothetical protein EZV62_012277 [Acer yangbiense]2.6e-1233.75Show/hide
Query:  MAESNIFKKLEGLNLAEERTWGIVEIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSKIWNIESPISFDRAELKG-----IHKISELE-FRRVVR
        M ++ I +  E L++ +E    ++E  +D   D     E  LV KVL+ + V  + FK ++ +IWN   P      E+ G      + I+ ++  +R +R
Subjt:  MAESNIFKKLEGLNLAEERTWGIVEIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSKIWNIESPISFDRAELKG-----IHKISELE-FRRVVR

Query:  FKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECE--ESHLAQGGDLP--FGSWLREP
         KLG   +     + YE+LP+ CF CGKIGHG +EC+  E+  A    LP  FGSWL+ P
Subjt:  FKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECE--ESHLAQGGDLP--FGSWLREP

TXG61030.1 hypothetical protein EZV62_012393 [Acer yangbiense]9.2e-1027.45Show/hide
Query:  MAESNIFKKLEGLNLAEERTWGIVEIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSKIW-----------NIESPI--------SFDRAEL-KG
        M    I K  E L+LAEE    ++E+ ++   D     +  LV KVL+ + V  E FK ++ +IW           ++E P+         F++AE    
Subjt:  MAESNIFKKLEGLNLAEERTWGIVEIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSKIW-----------NIESPI--------SFDRAEL-KG

Query:  IHKISEL-----------------------------EFRRV-------------VRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECEESHLAQ-
        IH I  L                             +F RV             +RFKLG++ E     + YE+LP+ CF CG+IG+GI+EC +    + 
Subjt:  IHKISEL-----------------------------EFRRV-------------VRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECEESHLAQ-

Query:  ---GGDLPFGSWLREPSIWKGSSQNRGLEEVKSHVGRVSTQVVEARRGRGRGWSG
           G    +GSWL+ P + KG S             R S+QV  +   R R   G
Subjt:  ---GGDLPFGSWLREPSIWKGSSQNRGLEEVKSHVGRVSTQVVEARRGRGRGWSG

TXG70272.1 hypothetical protein EZV62_005207 [Acer yangbiense]3.4e-1233.52Show/hide
Query:  RATLRVCVSLDLSAAPVELSSTGKSCCLGRDLVSRFGLGCYRVDPLMAESNIFKKLEGLNLAEERTWGIV-EIGDDDIEDYSRSCETKLVCKVLTNRNVV
        + TL   V+  L    + LSS        +DLV      C    P MA S I    + L+L +E    +V E+ ++   D     E  LV KVL+ +NV 
Subjt:  RATLRVCVSLDLSAAPVELSSTGKSCCLGRDLVSRFGLGCYRVDPLMAESNIFKKLEGLNLAEERTWGIV-EIGDDDIEDYSRSCETKLVCKVLTNRNVV

Query:  LEVFKSVMSKIWNIESPISFDRAELKGIHKISELEFRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECEE
        ++ FK ++ +IW+      F + E++     S    +R +R K GS  E     + YEKLPD CF CG+IGHGI++CE+
Subjt:  LEVFKSVMSKIWNIESPISFDRAELKGIHKISELEFRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECEE

TXG72946.1 hypothetical protein EZV62_001525 [Acer yangbiense]3.2e-1030.96Show/hide
Query:  MAESNIFKKLEGLNLAEERTWGIV-EIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSK--IWNIES-----PISFDRAELKGIHKISELE----
        M  + I K    L+LA+E   G+V EI +D         E  LV KVL+ + V  E FK ++ +   W  E       I F+ +E  G +   ++     
Subjt:  MAESNIFKKLEGLNLAEERTWGIV-EIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSK--IWNIES-----PISFDRAELKGIHKISELE----

Query:  --FRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQEC----EESHLAQGGDLPFGSWLREPSIWKGSSQNRGLEEVKSHVGRVSTQVVEARRG
           +R +R KLG   E     + Y++LPD C+ CG+IGHG++EC     +S   +G    FGSWLR  S  K S+             R++TQV+ +   
Subjt:  --FRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQEC----EESHLAQGGDLPFGSWLREPSIWKGSSQNRGLEEVKSHVGRVSTQVVEARRG

Query:  RGRGWSGWEVGNRSEGEAGKSRDVGRKKGLLSTDEVEEG
        R          N  E E G S  V +K G  S+  V+ G
Subjt:  RGRGWSGWEVGNRSEGEAGKSRDVGRKKGLLSTDEVEEG

TrEMBL top hitse value%identityAlignment
A0A5C7HCW1 CCHC-type domain-containing protein3.1e-1130.48Show/hide
Query:  MAESNIFKKLEGLNLAEERTWGIVEIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSKIWN-----------IESPISFDRA-----ELKGIHKI
        M+   I    E L++AEE    ++E  + +IED ++  +  LV KVLT + V  E F+S++ +IW+           +E P            +K    I
Subjt:  MAESNIFKKLEGLNLAEERTWGIVEIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSKIWN-----------IESPISFDRA-----ELKGIHKI

Query:  SELEFRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQEC----EESHLAQGGDLPFGSWLR----EPSIWKGSSQNRGLEEVKSHVGRVSTQV
        S+   RR +R KLG   E     + YE+LP+ C+ CG++GHGI EC          +     +G+WL+    E   ++ +SQ     E  S  GR ST+ 
Subjt:  SELEFRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQEC----EESHLAQGGDLPFGSWLR----EPSIWKGSSQNRGLEEVKSHVGRVSTQV

Query:  VEARRGRGRG
          +R G G G
Subjt:  VEARRGRGRG

A0A5C7HVT5 CCHC-type domain-containing protein1.3e-1233.75Show/hide
Query:  MAESNIFKKLEGLNLAEERTWGIVEIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSKIWNIESPISFDRAELKG-----IHKISELE-FRRVVR
        M ++ I +  E L++ +E    ++E  +D   D     E  LV KVL+ + V  + FK ++ +IWN   P      E+ G      + I+ ++  +R +R
Subjt:  MAESNIFKKLEGLNLAEERTWGIVEIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSKIWNIESPISFDRAELKG-----IHKISELE-FRRVVR

Query:  FKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECE--ESHLAQGGDLP--FGSWLREP
         KLG   +     + YE+LP+ CF CGKIGHG +EC+  E+  A    LP  FGSWL+ P
Subjt:  FKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECE--ESHLAQGGDLP--FGSWLREP

A0A5C7IP92 CCHC-type domain-containing protein1.6e-1233.52Show/hide
Query:  RATLRVCVSLDLSAAPVELSSTGKSCCLGRDLVSRFGLGCYRVDPLMAESNIFKKLEGLNLAEERTWGIV-EIGDDDIEDYSRSCETKLVCKVLTNRNVV
        + TL   V+  L    + LSS        +DLV      C    P MA S I    + L+L +E    +V E+ ++   D     E  LV KVL+ +NV 
Subjt:  RATLRVCVSLDLSAAPVELSSTGKSCCLGRDLVSRFGLGCYRVDPLMAESNIFKKLEGLNLAEERTWGIV-EIGDDDIEDYSRSCETKLVCKVLTNRNVV

Query:  LEVFKSVMSKIWNIESPISFDRAELKGIHKISELEFRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECEE
        ++ FK ++ +IW+      F + E++     S    +R +R K GS  E     + YEKLPD CF CG+IGHGI++CE+
Subjt:  LEVFKSVMSKIWNIESPISFDRAELKGIHKISELEFRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECEE

A0A5C7IWR3 CCHC-type domain-containing protein1.5e-1030.96Show/hide
Query:  MAESNIFKKLEGLNLAEERTWGIV-EIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSK--IWNIES-----PISFDRAELKGIHKISELE----
        M  + I K    L+LA+E   G+V EI +D         E  LV KVL+ + V  E FK ++ +   W  E       I F+ +E  G +   ++     
Subjt:  MAESNIFKKLEGLNLAEERTWGIV-EIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVMSK--IWNIES-----PISFDRAELKGIHKISELE----

Query:  --FRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQEC----EESHLAQGGDLPFGSWLREPSIWKGSSQNRGLEEVKSHVGRVSTQVVEARRG
           +R +R KLG   E     + Y++LPD C+ CG+IGHG++EC     +S   +G    FGSWLR  S  K S+             R++TQV+ +   
Subjt:  --FRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQEC----EESHLAQGGDLPFGSWLREPSIWKGSSQNRGLEEVKSHVGRVSTQVVEARRG

Query:  RGRGWSGWEVGNRSEGEAGKSRDVGRKKGLLSTDEVEEG
        R          N  E E G S  V +K G  S+  V+ G
Subjt:  RGRGWSGWEVGNRSEGEAGKSRDVGRKKGLLSTDEVEEG

A0A5D3C0K2 Reverse transcriptase4.5e-1041.76Show/hide
Query:  KLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECEESHLAQGGDLPFGSWLREPSIWKGSSQNRGLEEVKSHVGRVSTQVVEARRGRGRG
        KLG M +E W P+SYEKLPD C+ CG++GH +QEC+E          FG WLR+    +  S+ R  EEV+S         ++  RG G+G
Subjt:  KLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECEESHLAQGGDLPFGSWLREPSIWKGSSQNRGLEEVKSHVGRVSTQVVEARRGRGRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGAAAGGGCAACTCTTAGGGTTTGCGTTTCTTTGGACCTGTCGGCGGCACCAGTGGAGCTTTCGTCTACTGGGAAGAGTTGTTGTCTGGGTAGAGACCTGGTCTC
TCGGTTCGGTCTTGGGTGCTATCGGGTTGATCCTCTGATGGCAGAGTCGAATATCTTCAAGAAATTGGAGGGGTTGAACCTAGCAGAAGAAAGAACATGGGGCATTGTAG
AAATTGGAGACGATGATATTGAAGATTACAGTCGCTCTTGTGAAACAAAACTGGTGTGCAAAGTTTTAACGAATCGAAACGTTGTCCTGGAGGTCTTCAAATCGGTCATG
TCGAAAATATGGAACATTGAGTCACCCATCTCCTTTGACCGAGCGGAGTTGAAAGGTATTCATAAAATTTCTGAGCTGGAGTTCAGGCGTGTTGTGCGGTTCAAATTAGG
ATCCATGACAGAGGAAGCTTGGGCTCCAATCAGTTATGAGAAGTTGCCTGATTTGTGCTTTGGTTGTGGGAAAATAGGACATGGAATCCAAGAGTGCGAGGAAAGTCATC
TGGCCCAAGGAGGAGATCTTCCTTTCGGGAGTTGGCTACGCGAACCTTCGATATGGAAAGGAAGTTCTCAGAACAGGGGTTTAGAAGAAGTTAAAAGCCATGTGGGAAGG
GTTTCAACTCAAGTCGTTGAAGCGAGAAGGGGCCGAGGACGAGGATGGTCAGGGTGGGAAGTAGGTAATCGGAGTGAGGGGGAAGCAGGAAAATCGAGGGATGTTGGTCG
GAAAAAGGGCCTTCTTTCGACGGACGAAGTCGAGGAAGGGGAAACCCAGGCGGCAATAGCAGGGGTCACTCCCGAGGAAATGGTGGGCCCCAACGGTAATATCAAGGTGG
GCCCCACCCTCTGTGGTGTCAATATGGAACCAACAGGAAAAGCTTTTGGGAATATGACGCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGAAAGGGCAACTCTTAGGGTTTGCGTTTCTTTGGACCTGTCGGCGGCACCAGTGGAGCTTTCGTCTACTGGGAAGAGTTGTTGTCTGGGTAGAGACCTGGTCTC
TCGGTTCGGTCTTGGGTGCTATCGGGTTGATCCTCTGATGGCAGAGTCGAATATCTTCAAGAAATTGGAGGGGTTGAACCTAGCAGAAGAAAGAACATGGGGCATTGTAG
AAATTGGAGACGATGATATTGAAGATTACAGTCGCTCTTGTGAAACAAAACTGGTGTGCAAAGTTTTAACGAATCGAAACGTTGTCCTGGAGGTCTTCAAATCGGTCATG
TCGAAAATATGGAACATTGAGTCACCCATCTCCTTTGACCGAGCGGAGTTGAAAGGTATTCATAAAATTTCTGAGCTGGAGTTCAGGCGTGTTGTGCGGTTCAAATTAGG
ATCCATGACAGAGGAAGCTTGGGCTCCAATCAGTTATGAGAAGTTGCCTGATTTGTGCTTTGGTTGTGGGAAAATAGGACATGGAATCCAAGAGTGCGAGGAAAGTCATC
TGGCCCAAGGAGGAGATCTTCCTTTCGGGAGTTGGCTACGCGAACCTTCGATATGGAAAGGAAGTTCTCAGAACAGGGGTTTAGAAGAAGTTAAAAGCCATGTGGGAAGG
GTTTCAACTCAAGTCGTTGAAGCGAGAAGGGGCCGAGGACGAGGATGGTCAGGGTGGGAAGTAGGTAATCGGAGTGAGGGGGAAGCAGGAAAATCGAGGGATGTTGGTCG
GAAAAAGGGCCTTCTTTCGACGGACGAAGTCGAGGAAGGGGAAACCCAGGCGGCAATAGCAGGGGTCACTCCCGAGGAAATGGTGGGCCCCAACGGTAATATCAAGGTGG
GCCCCACCCTCTGTGGTGTCAATATGGAACCAACAGGAAAAGCTTTTGGGAATATGACGCTCTAA
Protein sequenceShow/hide protein sequence
MSERATLRVCVSLDLSAAPVELSSTGKSCCLGRDLVSRFGLGCYRVDPLMAESNIFKKLEGLNLAEERTWGIVEIGDDDIEDYSRSCETKLVCKVLTNRNVVLEVFKSVM
SKIWNIESPISFDRAELKGIHKISELEFRRVVRFKLGSMTEEAWAPISYEKLPDLCFGCGKIGHGIQECEESHLAQGGDLPFGSWLREPSIWKGSSQNRGLEEVKSHVGR
VSTQVVEARRGRGRGWSGWEVGNRSEGEAGKSRDVGRKKGLLSTDEVEEGETQAAIAGVTPEEMVGPNGNIKVGPTLCGVNMEPTGKAFGNMTL