| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_022158561.1 DNA-directed RNA polymerase V subunit 5A [Momordica charantia] | 1.3e-109 | 88.99 | Show/hide |
Query: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
MEEDGF+GEPNRVELGTCLSSYID+G+ ESHRYFL RRTVLEMLRDRGY SD DLTLQQFREI+GQSPDVDRLKLS VHRSDPSKRILVIFCGTG+V
Subjt: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
Query: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
K+N +RNIAGQIVNKDTLH LILIVQNQITNQAMK+V+ +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVSYDGDMTRSHVTYRCVW
GLEKGQVVKV+YDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVSYDGDMTRSHVTYRCVW
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| XP_022950955.1 DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita moschata] | 1.9e-110 | 89.43 | Show/hide |
Query: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTLQQFREI+GQ DVDRLKLS HR+DPSKRILVIFCGTGAV
Subjt: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
Query: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
K++ +RNIAGQIVNK+TLH LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVSYDGDMTRSHVTYRCVW
GLEKGQ+VKV+YDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVSYDGDMTRSHVTYRCVW
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| XP_022971518.1 DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita maxima] | 1.1e-110 | 89.43 | Show/hide |
Query: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTLQQFREI+GQ PDVDRLKLS HR+DPSKRILVIFCGTGAV
Subjt: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
Query: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
K++ +RNIAGQIVNK+TLH LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVSYDGDMTRSHVTYRCVW
LEKGQ+VKV+YDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVSYDGDMTRSHVTYRCVW
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| XP_023539155.1 DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo] | 8.8e-111 | 89.43 | Show/hide |
Query: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTLQQFREI+GQ PDVDRLKLS H +DPSKRILVIFCGTGAV
Subjt: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
Query: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
K++ +RNIAGQIVNK+TLH LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVSYDGDMTRSHVTYRCVW
GLEKGQ+VKV+YDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVSYDGDMTRSHVTYRCVW
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| XP_038903402.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] | 1.3e-109 | 87.67 | Show/hide |
Query: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
MEEDGF+GEPN VE GTCLSSYID+GT ESHRYFLSRRTVLEMLRDRGY +N SDIDL+LQQFREI+GQSPDVDRLKLS VHRSDPSKR+LVIFCGTGAV
Subjt: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
Query: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
K+N +RNIAGQI NKD+LH LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVL+EEEK KLL+QYSIEEKQLPRMLR DA+ARYY
Subjt: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVSYDGDMTRSHVTYRCVW
GLEKGQVVKV+YDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVSYDGDMTRSHVTYRCVW
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A6J1E191 DNA-directed RNA polymerase V subunit 5A | 6.1e-110 | 88.99 | Show/hide |
Query: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
MEEDGF+GEPNRVELGTCLSSYID+G+ ESHRYFL RRTVLEMLRDRGY SD DLTLQQFREI+GQSPDVDRLKLS VHRSDPSKRILVIFCGTG+V
Subjt: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
Query: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
K+N +RNIAGQIVNKDTLH LILIVQNQITNQAMK+V+ +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLLKQYSIEEKQLPRMLRTDAIARYY
Subjt: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVSYDGDMTRSHVTYRCVW
GLEKGQVVKV+YDGDMT SHVTYRCVW
Subjt: GLEKGQVVKVSYDGDMTRSHVTYRCVW
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| A0A6J1GH86 DNA-directed RNA polymerase V subunit 5A isoform X2 | 9.4e-111 | 89.43 | Show/hide |
Query: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTLQQFREI+GQ DVDRLKLS HR+DPSKRILVIFCGTGAV
Subjt: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
Query: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
K++ +RNIAGQIVNK+TLH LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVSYDGDMTRSHVTYRCVW
GLEKGQ+VKV+YDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVSYDGDMTRSHVTYRCVW
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| A0A6J1GHB9 DNA-directed RNA polymerase V subunit 5A isoform X1 | 6.3e-107 | 88.39 | Show/hide |
Query: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTLQQFREI+GQ DVDRLKLS HR+DPSKRILVIFCGTGAV
Subjt: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
Query: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
K++ +RNIAGQIVNK+TLH LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVSYDGDMTRSHVTYR
GLEKGQ+VKV+YDGDMTRSHVT++
Subjt: GLEKGQVVKVSYDGDMTRSHVTYR
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| A0A6J1I260 DNA-directed RNA polymerase V subunit 5A isoform X1 | 3.7e-107 | 88.39 | Show/hide |
Query: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTLQQFREI+GQ PDVDRLKLS HR+DPSKRILVIFCGTGAV
Subjt: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
Query: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
K++ +RNIAGQIVNK+TLH LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVSYDGDMTRSHVTYR
LEKGQ+VKV+YDGDMTRSHVT++
Subjt: GLEKGQVVKVSYDGDMTRSHVTYR
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| A0A6J1I733 DNA-directed RNA polymerase V subunit 5A isoform X2 | 5.5e-111 | 89.43 | Show/hide |
Query: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
MEEDGF GEPNRVELGTCLSSYIDDGT ESHRY+LSRRTVLEMLRDRGY INPSDIDLTLQQFREI+GQ PDVDRLKLS HR+DPSKRILVIFCGTGAV
Subjt: MEEDGFDGEPNRVELGTCLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAV
Query: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
K++ +RNIAGQIVNK+TLH LILIVQNQITNQAMK+VE +SFKVEIFQITDLLVNI+KHALKPNHQVLTEEEK KLL+QYSIEEKQLPRMLRTDAIARYY
Subjt: KLNTVRNIAGQIVNKDTLHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYY
Query: GLEKGQVVKVSYDGDMTRSHVTYRCVW
LEKGQ+VKV+YDGDMTRSHVTYRCVW
Subjt: GLEKGQVVKVSYDGDMTRSHVTYRCVW
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| A8XGH1 DNA-directed RNA polymerases I, II, and III subunit RPABC1 | 3.5e-30 | 33.97 | Show/hide |
Query: DGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDR-----LKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLH
D E++R + R+TVL+M+ DRGY++ ++D L+ F+E G P + L + V H DP+ ++ V F + + T++ I Q + + +
Subjt: DGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDR-----LKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLH
Query: SLILIVQNQITNQAMKSVEGWS--FKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
I++VQ +T A +S+ + + +E F +L+VNI++H L P H V+T EEK +LL +Y +++ QLPR+ + D +ARY+GL +GQVVK+ +
Subjt: SLILIVQNQITNQAMKSVEGWS--FKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
Query: RSHVTYRCV
++TYR V
Subjt: RSHVTYRCV
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| O81098 DNA-directed RNA polymerases II and IV subunit 5A | 1.9e-31 | 38.5 | Show/hide |
Query: ESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQ
E R + ++T+++MLRDRGY I S++ +T QQF HG + + L R+D S ++ + F V + T++ ++ +++ + IL+VQ
Subjt: ESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQ
Query: ITNQAMKSVEGWS--FKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCV
+T A + S F +E+FQ ++LVNI +H L P HQVLT EEK LL++Y+++E QLPR+ TD IARY+GL++GQVVK+ + +VTYR V
Subjt: ITNQAMKSVEGWS--FKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCV
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| Q9M1H8 DNA-directed RNA polymerase V subunit 5C | 2.6e-49 | 44.98 | Show/hide |
Query: CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDT
C+S D G ES R++L+R T EMLRDRGY +N +++ LTL +FR + G+ P+++RL++ V RSDP K+ILV+F GT + + +VR + QI N
Subjt: CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDT
Query: LHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
LH++IL++Q+++ + A K++ + F VE F I DLLVNI+KH +P ++L +EEK +LL+++++E+KQLP + D+ RYYGL+K QVVK++Y +
Subjt: LHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
Query: RSHVTYRCV
VTYRC+
Subjt: RSHVTYRCV
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| Q9M1J2 DNA-directed RNA polymerase V subunit 5A | 8.9e-74 | 60 | Show/hide |
Query: CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDT
CLS Y+D + ESHRY+L+RR L+MLRDRGY ++ DI+L+L FR ++G+ PDVDRL++S +HRSD +K++ ++F GT VK+N +R++ I++++T
Subjt: CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDT
Query: LHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
+ LIL++QN +TNQA+K++E +SFKVEIFQITDLLVNI+KH+LKP HQVL +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV+Y G++T
Subjt: LHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
Query: RSHVTYRCVW
SHV +RCVW
Subjt: RSHVTYRCVW
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| Q9ZVB9 DNA-directed RNA polymerases IV and V subunit 5B | 1.8e-66 | 58.33 | Show/hide |
Query: IDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLI
I + E H+Y+L+RRT +EMLRDRGY ++ DI+L+LQQFR ++G+ PDVD L++S HR D SK+I V+FCGTG VK+N +R IA +++++ + LI
Subjt: IDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLI
Query: LIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVT
L++Q+ ITNQA+K+VE +SFKVE+F+ITDLLVN+SKH L+P HQVL ++EK LLK++SIEEKQLPR+ D I RYYGLE GQV+KV+Y +++ SHVT
Subjt: LIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVT
Query: YRCV
YRCV
Subjt: YRCV
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G41340.1 RNA polymerase II fifth largest subunit, D | 1.3e-67 | 58.33 | Show/hide |
Query: IDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLI
I + E H+Y+L+RRT +EMLRDRGY ++ DI+L+LQQFR ++G+ PDVD L++S HR D SK+I V+FCGTG VK+N +R IA +++++ + LI
Subjt: IDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLI
Query: LIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVT
L++Q+ ITNQA+K+VE +SFKVE+F+ITDLLVN+SKH L+P HQVL ++EK LLK++SIEEKQLPR+ D I RYYGLE GQV+KV+Y +++ SHVT
Subjt: LIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVT
Query: YRCV
YRCV
Subjt: YRCV
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| AT3G22320.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 1.3e-32 | 38.5 | Show/hide |
Query: ESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQ
E R + ++T+++MLRDRGY I S++ +T QQF HG + + L R+D S ++ + F V + T++ ++ +++ + IL+VQ
Subjt: ESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLHSLILIVQNQ
Query: ITNQAMKSVEGWS--FKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCV
+T A + S F +E+FQ ++LVNI +H L P HQVLT EEK LL++Y+++E QLPR+ TD IARY+GL++GQVVK+ + +VTYR V
Subjt: ITNQAMKSVEGWS--FKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMTRSHVTYRCV
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| AT3G54490.1 RNA polymerase II fifth largest subunit, E | 1.9e-50 | 44.98 | Show/hide |
Query: CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDT
C+S D G ES R++L+R T EMLRDRGY +N +++ LTL +FR + G+ P+++RL++ V RSDP K+ILV+F GT + + +VR + QI N
Subjt: CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDT
Query: LHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
LH++IL++Q+++ + A K++ + F VE F I DLLVNI+KH +P ++L +EEK +LL+++++E+KQLP + D+ RYYGL+K QVVK++Y +
Subjt: LHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
Query: RSHVTYRCV
VTYRC+
Subjt: RSHVTYRCV
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| AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein | 6.3e-75 | 60 | Show/hide |
Query: CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDT
CLS Y+D + ESHRY+L+RR L+MLRDRGY ++ DI+L+L FR ++G+ PDVDRL++S +HRSD +K++ ++F GT VK+N +R++ I++++T
Subjt: CLSSYIDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQSPDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDT
Query: LHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
+ LIL++QN +TNQA+K++E +SFKVEIFQITDLLVNI+KH+LKP HQVL +EEK LLK++SIEEKQLPR+ + DAI RYYGLEKGQVVKV+Y G++T
Subjt: LHSLILIVQNQITNQAMKSVEGWSFKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
Query: RSHVTYRCVW
SHV +RCVW
Subjt: RSHVTYRCVW
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| AT5G57980.1 RNA polymerase II fifth largest subunit, C | 1.2e-25 | 33.82 | Show/hide |
Query: IDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQS---PDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLH
+ D +E R F RRTVL+MLRDRGY I SD++L ++F + ++ + + L +S +P+ +I V + V + ++ + D +H
Subjt: IDDGTNESHRYFLSRRTVLEMLRDRGYIINPSDIDLTLQQFREIHGQS---PDVDRLKLSVVHRSDPSKRILVIFCGTGAVKLNTVRNIAGQIVNKDTLH
Query: SLILIVQNQITNQAMKSVEGWS--FKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
I++V IT A +V + +E+F+ +L+ NI++H L + VL ++ K KLL Y++++ QLPR+L TD +ARYYGL++GQVVK+ +
Subjt: SLILIVQNQITNQAMKSVEGWS--FKVEIFQITDLLVNISKHALKPNHQVLTEEEKLKLLKQYSIEEKQLPRMLRTDAIARYYGLEKGQVVKVSYDGDMT
Query: RSHVTYR
+ TYR
Subjt: RSHVTYR
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