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Tan0013566 (gene) of Snake gourd v1 genome

Gene IDTan0013566
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase
Genome locationLG03:5062364..5062807
RNA-Seq ExpressionTan0013566
SyntenyTan0013566
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026280.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-2955.38Show/hide
Query:  KRDRQVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEKCFRVMR
        ++    EA         G   S+ ESS P  E N+EEQ+  R+ QRL    +   ++D EKKYGIERLKALGATTF GTT+P DAE WL LIEKCF+V R
Subjt:  KRDRQVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEKCFRVMR

Query:  CHEDRKVDLAAFLFQKGANDWWKITESQKR
        C EDRKV+LAAFL Q GA DWW + ES++R
Subjt:  CHEDRKVDLAAFLFQKGANDWWKITESQKR

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.4e-3056.03Show/hide
Query:  MARGGKRDRQVEAGTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIE
        M RG  R +  +A T  A  +   G   S+ ESS P  E NMEEQ+  R+ QRL    + S ++DPEKKYGIERLKALGATTF GTT+P DAE WL LIE
Subjt:  MARGGKRDRQVEAGTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIE

Query:  KCFRVMRCHEDRKVDLAAFLFQKG----ANDWWKITESQKR
        KCFRV RC EDRKV+LA+FL Q G      DWW++ ES++R
Subjt:  KCFRVMRCHEDRKVDLAAFLFQKG----ANDWWKITESQKR

KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.9e-3055.88Show/hide
Query:  MARGGKRDR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEK
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  R+ QRL    + S ++DPEKKYG ERLKALGATTF GTT+PTD E WL LIEK
Subjt:  MARGGKRDR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEK

Query:  CFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKR
        CFRV R  EDRKV+LAAFL Q  A DWW++ ES++R
Subjt:  CFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKR

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]4.9e-3055.88Show/hide
Query:  MARGGKRDR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEK
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  R+ QRL    + S ++DPEKKYG ERLKALGATTF GTT+PTD E WL LIEK
Subjt:  MARGGKRDR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEK

Query:  CFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKR
        CFRV R  EDRKV+LAAFL Q  A DWW++ ES++R
Subjt:  CFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKR

XP_038896416.1 uncharacterized protein LOC120084680 [Benincasa hispida]4.9e-3070.83Show/hide
Query:  MEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEKCFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKR
        ME+++F RITQRLA  SVGS + DPEKK+GIERLKALGATTF+GTTDP DAE WL LIEKCF+VMRC ED KV+LA FL QKG   WWK+ E+  R
Subjt:  MEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEKCFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKR

TrEMBL top hitse value%identityAlignment
A0A5A7SJ99 DNA/RNA polymerases superfamily protein1.2e-2955.38Show/hide
Query:  KRDRQVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEKCFRVMR
        ++    EA         G   S+ ESS P  E N+EEQ+  R+ QRL    +   ++D EKKYGIERLKALGATTF GTT+P DAE WL LIEKCF+V R
Subjt:  KRDRQVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEKCFRVMR

Query:  CHEDRKVDLAAFLFQKGANDWWKITESQKR
        C EDRKV+LAAFL Q GA DWW + ES++R
Subjt:  CHEDRKVDLAAFLFQKGANDWWKITESQKR

A0A5A7T1M0 Reverse transcriptase2.4e-3055.88Show/hide
Query:  MARGGKRDR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEK
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  R+ QRL    + S ++DPEKKYG ERLKALGATTF GTT+PTD E WL LIEK
Subjt:  MARGGKRDR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEK

Query:  CFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKR
        CFRV R  EDRKV+LAAFL Q  A DWW++ ES++R
Subjt:  CFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKR

A0A5A7ULX5 DNA/RNA polymerases superfamily protein1.9e-2750.68Show/hide
Query:  MARGGKRDRQV-EAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEK
        M RG  R R V EA           E  + ESS P  E N+EEQ+  R+ QR   + + ST++D EKK+ IERLKALG+TTF  TT+P +AE WL LIEK
Subjt:  MARGGKRDRQV-EAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEK

Query:  CFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKRRNLELERVSKGL
        CFRVMRC EDRKV+L+AFL Q GA DWW      K      +R  +GL
Subjt:  CFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKRRNLELERVSKGL

A0A5D3BB91 Reverse transcriptase2.4e-3055.88Show/hide
Query:  MARGGKRDR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEK
        M RG  R     EA         G   S+ ESS P+ E N+EEQ+  R+ QRL    + S ++DPEKKYG ERLKALGATTF GTT+PTD E WL LIEK
Subjt:  MARGGKRDR-QVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEK

Query:  CFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKR
        CFRV R  EDRKV+LAAFL Q  A DWW++ ES++R
Subjt:  CFRVMRCHEDRKVDLAAFLFQKGANDWWKITESQKR

A0A5D3DES5 DNA/RNA polymerases superfamily protein4.1e-3056.03Show/hide
Query:  MARGGKRDRQVEAGTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIE
        M RG  R +  +A T  A  +   G   S+ ESS P  E NMEEQ+  R+ QRL    + S ++DPEKKYGIERLKALGATTF GTT+P DAE WL LIE
Subjt:  MARGGKRDRQVEAGTQEATGD--RGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIE

Query:  KCFRVMRCHEDRKVDLAAFLFQKG----ANDWWKITESQKR
        KCFRV RC EDRKV+LA+FL Q G      DWW++ ES++R
Subjt:  KCFRVMRCHEDRKVDLAAFLFQKG----ANDWWKITESQKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCGAGGTGGCAAACGAGATAGGCAAGTGGAGGCCGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAAAAGTGTTGGATCAACACGAGCAGATCCCGAAAAGAAGTATGGCATTGAAAGACTGA
AGGCCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCACTGATGCTGAGGGTTGGTTAAATCTGATTGAGAAGTGTTTTAGGGTCATGCGATGCCATGAAGACAGG
AAGGTCGATTTAGCAGCATTCTTGTTCCAGAAAGGAGCAAATGATTGGTGGAAGATAACAGAGAGCCAAAAAAGGAGAAACTTGGAGCTGGAAAGAGTTTCGAAAGGCCT
TTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCGAGGTGGCAAACGAGATAGGCAAGTGGAGGCCGGAACTCAAGAAGCTACTGGTGATAGAGGAAGAGAGGTATCAGAGGGAGAGTCTAGTCATCCTCAGCAAGA
GGTGAACATGGAGGAACAGATCTTTACGAGGATAACTCAAAGATTAGCTGAAAAAAGTGTTGGATCAACACGAGCAGATCCCGAAAAGAAGTATGGCATTGAAAGACTGA
AGGCCTTAGGTGCAACAACATTTGAAGGCACGACAGATCCCACTGATGCTGAGGGTTGGTTAAATCTGATTGAGAAGTGTTTTAGGGTCATGCGATGCCATGAAGACAGG
AAGGTCGATTTAGCAGCATTCTTGTTCCAGAAAGGAGCAAATGATTGGTGGAAGATAACAGAGAGCCAAAAAAGGAGAAACTTGGAGCTGGAAAGAGTTTCGAAAGGCCT
TTGA
Protein sequenceShow/hide protein sequence
MARGGKRDRQVEAGTQEATGDRGREVSEGESSHPQQEVNMEEQIFTRITQRLAEKSVGSTRADPEKKYGIERLKALGATTFEGTTDPTDAEGWLNLIEKCFRVMRCHEDR
KVDLAAFLFQKGANDWWKITESQKRRNLELERVSKGL