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Tan0013590 (gene) of Snake gourd v1 genome

Gene IDTan0013590
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG03:73988999..73990248
RNA-Seq ExpressionTan0013590
SyntenyTan0013590
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAS55787.1 hypothetical protein [Oryza sativa Japonica Group]4.5e-1124.15Show/hide
Query:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFSGHKR
        L  KG  W++GNG+ + I +DPWI R  S  PV +  +   K VS L+ ED  W+   I   F+  D + I       R  +D I W PD  G FS    
Subjt:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFSGHKR

Query:  KAGVLKNYGLRSYFTSPQTRLNKQ---------SSSFGVFGQREIHNDQATQATR-------------LNNIYKDSWTDTMIITKTIDFYLRSQNDRVV-
            L+   + +  +S  +RLNK               +F  R   N  AT   +              +   +D+             ++  +  + V 
Subjt:  KAGVLKNYGLRSYFTSPQTRLNKQ---------SSSFGVFGQREIHNDQATQATR-------------LNNIYKDSWTDTMIITKTIDFYLRSQNDRVV-

Query:  ----PPVAARLESP-ASPTRWQPPLR-------------HSQGSPI------CVGSSLYNHNWPIKALE---EAAILTGLKSLRQIEESAQFPLLVESDC
            P   A   +P A   RW+ P               +S+   I      C+G+ +++    + +     EA +   ++ L         P+ VE+DC
Subjt:  ----PPVAARLESP-ASPTRWQPPLR-------------HSQGSPI------CVGSSLYNHNWPIKALE---EAAILTGLKSLRQIEESAQFPLLVESDC

Query:  LYLITALNHPDFDLSEIKNLVEE
          +I  LNHPD D S + N+ +E
Subjt:  LYLITALNHPDFDLSEIKNLVEE

EEC73134.1 hypothetical protein OsI_07152 [Oryza sativa Indica Group]1.2e-1140.62Show/hide
Query:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS
        L  KG  W+VGNG  I + +DPWI R  S  P+    +   K VS +L  D  W+E L+ +IF+P DVE+I+      R+ +D + W PD  G FS
Subjt:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS

KQK16103.2 hypothetical protein BRADI_1g26757v3 [Brachypodium distachyon]3.4e-1140.62Show/hide
Query:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS
        L  KG  W+VGNG  + I +DPWI R  S  P+        K VS LL +D  WN  L+ + F+P D+E II      R  +D + W PD +G FS
Subjt:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS

PNT67131.1 hypothetical protein BRADI_3g21421v3 [Brachypodium distachyon]2.0e-1137.5Show/hide
Query:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS
        L  +G  W++GNG  + I +DPWI R  S  P+    +   + VS LL  D KWN   + + F+P D+E I+   P  R  +D + W PD +G FS
Subjt:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]3.6e-1342.71Show/hide
Query:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS
        LF KGYRWKVGNG  I ++ DPW+ R G+  PV+T   + +  V++L+    +W+E  +R  FI S+ + I+ TP   +   DEIIW  D  G FS
Subjt:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS

TrEMBL top hitse value%identityAlignment
A0A0Q3GYN2 Uncharacterized protein1.7e-1140.62Show/hide
Query:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS
        L  KG  W+VGNG  + I +DPWI R  S  P+        K VS LL +D  WN  L+ + F+P D+E II      R  +D + W PD +G FS
Subjt:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS

A0A2K2CYM9 Uncharacterized protein9.7e-1237.5Show/hide
Query:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS
        L  +G  W++GNG  + I +DPWI R  S  P+    +   + VS LL  D KWN   + + F+P D+E I+   P  R  +D + W PD +G FS
Subjt:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS

A0A6J1DRA0 uncharacterized protein LOC1110224231.8e-1342.71Show/hide
Query:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS
        LF KGYRWKVGNG  I ++ DPW+ R G+  PV+T   + +  V++L+    +W+E  +R  FI S+ + I+ TP   +   DEIIW  D  G FS
Subjt:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS

B8AHI8 Uncharacterized protein5.7e-1240.62Show/hide
Query:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS
        L  KG  W+VGNG  I + +DPWI R  S  P+    +   K VS +L  D  W+E L+ +IF+P DVE+I+      R+ +D + W PD  G FS
Subjt:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFS

Q75M12 Reverse transcriptase domain-containing protein2.2e-1124.15Show/hide
Query:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFSGHKR
        L  KG  W++GNG+ + I +DPWI R  S  PV +  +   K VS L+ ED  W+   I   F+  D + I       R  +D I W PD  G FS    
Subjt:  LFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFSGHKR

Query:  KAGVLKNYGLRSYFTSPQTRLNKQ---------SSSFGVFGQREIHNDQATQATR-------------LNNIYKDSWTDTMIITKTIDFYLRSQNDRVV-
            L+   + +  +S  +RLNK               +F  R   N  AT   +              +   +D+             ++  +  + V 
Subjt:  KAGVLKNYGLRSYFTSPQTRLNKQ---------SSSFGVFGQREIHNDQATQATR-------------LNNIYKDSWTDTMIITKTIDFYLRSQNDRVV-

Query:  ----PPVAARLESP-ASPTRWQPPLR-------------HSQGSPI------CVGSSLYNHNWPIKALE---EAAILTGLKSLRQIEESAQFPLLVESDC
            P   A   +P A   RW+ P               +S+   I      C+G+ +++    + +     EA +   ++ L         P+ VE+DC
Subjt:  ----PPVAARLESP-ASPTRWQPPLR-------------HSQGSPI------CVGSSLYNHNWPIKALE---EAAILTGLKSLRQIEESAQFPLLVESDC

Query:  LYLITALNHPDFDLSEIKNLVEE
          +I  LNHPD D S + N+ +E
Subjt:  LYLITALNHPDFDLSEIKNLVEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCTCACAAAAAGTGTTATTCCTAAAAGGCTATAGATGGAAAGTTGGGAATGGATCCCAAATTTACATCACTAAAGATCCTTGGATCGCAAGACAAGGGAGTCACCT
TCCTGTGTGGACATCAGAAGACCTAGCGGATAAAATGGTGAGCTTCCTTCTTCATGAGGATCTAAAATGGAATGAGCCCCTCATCAGATCAATCTTCATCCCTAGTGATG
TTGAGGATATCATAAATACCCCTCCGGGATGGAGAAGAGCTAAAGATGAAATTATATGGAGCCCGGACCCAAAAGGCCCATTCTCTGGCCACAAAAGGAAGGCTGGAGTC
CTGAAGAATTATGGGCTTAGATCGTACTTCACTTCTCCCCAAACCAGATTGAACAAACAATCATCATCATTTGGTGTATTTGGACAGAGAGAGATTCACAATGATCAAGC
TACTCAAGCTACACGATTGAACAACATTTATAAAGATTCTTGGACTGACACTATGATTATCACAAAAACCATTGATTTTTACCTGAGGTCTCAAAATGATCGAGTGGTTC
CTCCAGTGGCGGCAAGGCTTGAGAGTCCTGCGAGTCCGACCCGTTGGCAGCCCCCCCTCAGGCACTCTCAGGGGTCTCCAATCTGTGTTGGCTCATCACTCTATAACCAC
AATTGGCCAATCAAAGCCCTTGAAGAAGCTGCTATCCTCACTGGTTTGAAGTCTCTTCGCCAAATTGAGGAATCTGCCCAATTTCCTCTTCTTGTTGAATCTGATTGCTT
GTACCTCATCACGGCGTTGAACCACCCAGACTTCGATCTCTCTGAGATTAAAAATCTCGTGGAAGAAATCGCTGACGAAAGCGCTATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCTCACAAAAAGTGTTATTCCTAAAAGGCTATAGATGGAAAGTTGGGAATGGATCCCAAATTTACATCACTAAAGATCCTTGGATCGCAAGACAAGGGAGTCACCT
TCCTGTGTGGACATCAGAAGACCTAGCGGATAAAATGGTGAGCTTCCTTCTTCATGAGGATCTAAAATGGAATGAGCCCCTCATCAGATCAATCTTCATCCCTAGTGATG
TTGAGGATATCATAAATACCCCTCCGGGATGGAGAAGAGCTAAAGATGAAATTATATGGAGCCCGGACCCAAAAGGCCCATTCTCTGGCCACAAAAGGAAGGCTGGAGTC
CTGAAGAATTATGGGCTTAGATCGTACTTCACTTCTCCCCAAACCAGATTGAACAAACAATCATCATCATTTGGTGTATTTGGACAGAGAGAGATTCACAATGATCAAGC
TACTCAAGCTACACGATTGAACAACATTTATAAAGATTCTTGGACTGACACTATGATTATCACAAAAACCATTGATTTTTACCTGAGGTCTCAAAATGATCGAGTGGTTC
CTCCAGTGGCGGCAAGGCTTGAGAGTCCTGCGAGTCCGACCCGTTGGCAGCCCCCCCTCAGGCACTCTCAGGGGTCTCCAATCTGTGTTGGCTCATCACTCTATAACCAC
AATTGGCCAATCAAAGCCCTTGAAGAAGCTGCTATCCTCACTGGTTTGAAGTCTCTTCGCCAAATTGAGGAATCTGCCCAATTTCCTCTTCTTGTTGAATCTGATTGCTT
GTACCTCATCACGGCGTTGAACCACCCAGACTTCGATCTCTCTGAGATTAAAAATCTCGTGGAAGAAATCGCTGACGAAAGCGCTATCTAG
Protein sequenceShow/hide protein sequence
MRSQKVLFLKGYRWKVGNGSQIYITKDPWIARQGSHLPVWTSEDLADKMVSFLLHEDLKWNEPLIRSIFIPSDVEDIINTPPGWRRAKDEIIWSPDPKGPFSGHKRKAGV
LKNYGLRSYFTSPQTRLNKQSSSFGVFGQREIHNDQATQATRLNNIYKDSWTDTMIITKTIDFYLRSQNDRVVPPVAARLESPASPTRWQPPLRHSQGSPICVGSSLYNH
NWPIKALEEAAILTGLKSLRQIEESAQFPLLVESDCLYLITALNHPDFDLSEIKNLVEEIADESAI