CuGenDBv2

Gene ID	Tan0013603
Organism	Trichosanthes anguina (Snake gourd v1)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Genome location	LG06:77832699..77833632
RNA-Seq Expression	Tan0013603
Synteny	Tan0013603
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022138383.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Momordica charantia]

3.3e-88

84.54

Show/hide

Query:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT
        MAAF+QAKICP T S+LDRI RSEN D+LR RSQVVLPSQEVCRR  L NGMSLV  L F NNG  PL+ARAEETPNDK+EE +GV+G IKSIFDPNERT
Subjt:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT

Query:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL
        KSGKVLPKAYLKSARE+VKTLRES+QEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTV QEESY  LEKAIRSLA FYAKAGPSAPLPE VKSDIL+DL
Subjt:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL

Query:  NKAEEFL
        +KAEEFL
Subjt:  NKAEEFL

XP_022958810.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita moschata]

1.7e-89

87.44

Show/hide

Query:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT
        M AFIQAKICP TISTLDRIS SEN  +LR RSQVVLPSQE+CRR  L NGMS VA LTF NN LTPL+ARAEE PNDKEEE +GVIG+IKSIFDPNERT
Subjt:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT

Query:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL
        KSGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESY VLEKAIRSLAGFYAKAGPSAPLPEDVKSDIL+DL
Subjt:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL

Query:  NKAEEFL
        +KAEEFL
Subjt:  NKAEEFL

XP_023006140.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita maxima]

1.2e-87

85.99

Show/hide

Query:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT
        M AFIQAKICP TIST DRIS SEN  +LR  SQVVLPSQE+CRR  L NGMSLVA LTF NN LTP +ARAEETPN KEEE +GVIG+IKSIFDPNERT
Subjt:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT

Query:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL
        KSGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ V+QEESY VLEKAIRSLAGFYAKAGPSAPLPEDVKSDIL+DL
Subjt:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL

Query:  NKAEEFL
        +KAEEFL
Subjt:  NKAEEFL

XP_023549108.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucurbita pepo subsp. pepo]

1.3e-89

87.44

Show/hide

Query:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT
        M AFIQAKICP TISTLDRIS SEN  +LR RSQVVLPSQE+CRR+ L NGMSLVA LTF NN LTPL+ARAEE PND EEE +GVIG+IKSIFDPNERT
Subjt:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT

Query:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL
        KSGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESY VLEKAIRSLAGFYAKAGPSAPLPEDVKSDIL+DL
Subjt:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL

Query:  NKAEEFL
        +KAEEFL
Subjt:  NKAEEFL

XP_038875361.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida]

1.1e-88

86.47

Show/hide

Query:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT
        MAAFIQA ICPTTISTLDR  +SEN  +LR RSQVVLPSQEVCRRH + +GMSLV  LT  NNGLTP  ARAEETPND EEE +GVIG+IKSIFDPNE+T
Subjt:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT

Query:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL
        KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQ+TVV+EESYVVLEKAI+SLAGFYAKAGPSAPLPE VKSDILDDL
Subjt:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL

Query:  NKAEEFL
        +KAEEFL
Subjt:  NKAEEFL

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BG68 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.1e-86

84.54

Show/hide

Query:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT
        MAAFIQAKICP TISTLDR   SEN  +L  RSQV LPSQE+CRRH + NGMSLV  LTF NNGLTP  A AEE PN+ EEE +GVIG+IKSIFDPNERT
Subjt:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT

Query:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL
        KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG+QT+VQEESYVVLEKAIRSLAGFYAKAGPSAPLPE VKSDILDDL
Subjt:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL

Query:  NKAEEFL
        +KAE  L
Subjt:  NKAEEFL

A0A5D3D0K6 Photosystem II D1 processing protein PSB27-H2

4.3e-86

84.06

Show/hide

Query:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT
        MAAFIQAKICP TI TLDR   SEN  +L  RSQV LPSQE+CRRH + NGMSLV  LTF NNGLTP  A AEE PN+ EEE +GVIG+IKSIFDPNERT
Subjt:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT

Query:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL
        KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG+QT+VQEESYVVLEKAIRSLAGFYAKAGPSAPLPE VKSDILDDL
Subjt:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL

Query:  NKAEEFL
        +KAE  L
Subjt:  NKAEEFL

A0A6J1CCV0 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

1.6e-88

84.54

Show/hide

Query:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT
        MAAF+QAKICP T S+LDRI RSEN D+LR RSQVVLPSQEVCRR  L NGMSLV  L F NNG  PL+ARAEETPNDK+EE +GV+G IKSIFDPNERT
Subjt:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT

Query:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL
        KSGKVLPKAYLKSARE+VKTLRES+QEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTV QEESY  LEKAIRSLA FYAKAGPSAPLPE VKSDIL+DL
Subjt:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL

Query:  NKAEEFL
        +KAEEFL
Subjt:  NKAEEFL

A0A6J1H448 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

8.4e-90

87.44

Show/hide

Query:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT
        M AFIQAKICP TISTLDRIS SEN  +LR RSQVVLPSQE+CRR  L NGMS VA LTF NN LTPL+ARAEE PNDKEEE +GVIG+IKSIFDPNERT
Subjt:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT

Query:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL
        KSGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ VVQEESY VLEKAIRSLAGFYAKAGPSAPLPEDVKSDIL+DL
Subjt:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL

Query:  NKAEEFL
        +KAEEFL
Subjt:  NKAEEFL

A0A6J1KWY8 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

6.0e-88

85.99

Show/hide

Query:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT
        M AFIQAKICP TIST DRIS SEN  +LR  SQVVLPSQE+CRR  L NGMSLVA LTF NN LTP +ARAEETPN KEEE +GVIG+IKSIFDPNERT
Subjt:  MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERT

Query:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL
        KSGKVLPKAYLKSAREVVKTLRESLQED KDGAKFRRTADAAKESIRDYL NWLGQQ V+QEESY VLEKAIRSLAGFYAKAGPSAPLPEDVKSDIL+DL
Subjt:  KSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDL

Query:  NKAEEFL
        +KAEEFL
Subjt:  NKAEEFL

SwissProt top hits

e value

%identity

Alignment

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

2.1e-53

67.66

Show/hide

Query:  RRHFLS---NGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTAD
        RR FL       S +A + FS      L A+A E   +K +EG+GV+G+ K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+PKD AKFRR+AD
Subjt:  RRHFLS---NGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTAD

Query:  AAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDLNKAEEFL
        AAKESIRDYLSNW GQ+TV  EESYV LE  IR+LA FY+KAGPSAPLP++VK++ILDDLNKAEEFL
Subjt:  AAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDLNKAEEFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

1.1e-04

26.47

Show/hide

Query:  YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG----QQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDLNKAEE
        Y+K    V+  +R +L     D       ADA  E +R+  ++W+     ++ ++ + S+  +  A+ +++G Y   GP+AP+P   K+ IL+++  AE+
Subjt:  YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG----QQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDLNKAEE

Query:  FL
         L
Subjt:  FL

AT1G05385.1 photosystem II 11 kDa protein-related

1.5e-54

67.66

Show/hide

Query:  RRHFLS---NGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTAD
        RR FL       S +A + FS      L A+A E   +K +EG+GV+G+ K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+PKD AKFRR+AD
Subjt:  RRHFLS---NGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTAD

Query:  AAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDLNKAEEFL
        AAKESIRDYLSNW GQ+TV  EESYV LE  IR+LA FY+KAGPSAPLP++VK++ILDDLNKAEEFL
Subjt:  AAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDLNKAEEFL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCTGCATTTATTCAAGCAAAGATCTGTCCTACAACTATTTCAACATTGGATAGAATCTCAAGAAGTGAAAATAGGGATCGACTGCGACCCAGGTCTCAAGTTGTGCT
TCCATCTCAAGAAGTTTGTAGACGTCATTTTTTGAGTAATGGCATGTCATTGGTTGCATGTCTCACATTTAGCAACAATGGATTGACACCATTGATGGCCCGGGCCGAAG
AAACACCAAATGACAAAGAGGAAGAGGGCGATGGAGTTATCGGGTCGATCAAATCAATATTTGATCCAAATGAGAGAACAAAATCCGGGAAAGTATTGCCAAAGGCTTAC
CTGAAGTCTGCAAGGGAGGTGGTGAAGACACTGCGTGAGTCATTACAGGAAGATCCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAGTCCATTAG
AGACTATTTAAGCAATTGGCTGGGGCAACAAACAGTTGTTCAAGAGGAATCTTACGTTGTGCTGGAGAAAGCAATAAGGTCATTGGCCGGCTTTTATGCAAAGGCTGGGC
CATCTGCGCCACTGCCAGAAGATGTTAAATCTGATATACTAGATGATTTGAATAAGGCCGAAGAATTCTTGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAAFIQAKICPTTISTLDRISRSENRDRLRPRSQVVLPSQEVCRRHFLSNGMSLVACLTFSNNGLTPLMARAEETPNDKEEEGDGVIGSIKSIFDPNERTKSGKVLPKAY
LKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEDVKSDILDDLNKAEEFL

Tan0013603 (gene) of Snake gourd v1 genome